miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 5' -56.6 NC_006146.1 + 54286 0.99 0.013607
Target:  5'- aGGGUCUCGCCUGaGACCAGGAAGCGAc -3'
miRNA:   3'- -CCCAGAGCGGACcUUGGUCCUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 170100 0.69 0.780296
Target:  5'- gGGGcCggCGCCgcagggGGGGCCGGcGggGCGu -3'
miRNA:   3'- -CCCaGa-GCGGa-----CCUUGGUC-CuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 166747 0.68 0.804397
Target:  5'- uGGGUUUCGgacgggaCCagcaguggcgagGGGACCAGGAGGgGAg -3'
miRNA:   3'- -CCCAGAGC-------GGa-----------CCUUGGUCCUUCgCU- -5'
29017 5' -56.6 NC_006146.1 + 47680 0.66 0.921818
Target:  5'- aGGGUCUCGUggaUGGAggACUuGGgcGUGGa -3'
miRNA:   3'- -CCCAGAGCGg--ACCU--UGGuCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 169463 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 170394 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 125941 0.7 0.713875
Target:  5'- aGGUCUUGC--GGAGCCAGGAgaaggggucuGGCGu -3'
miRNA:   3'- cCCAGAGCGgaCCUUGGUCCU----------UCGCu -5'
29017 5' -56.6 NC_006146.1 + 90054 0.7 0.723636
Target:  5'- aGGUggUGCUggagGGAGCCuAGGAGGCGGu -3'
miRNA:   3'- cCCAgaGCGGa---CCUUGG-UCCUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 12905 0.69 0.780296
Target:  5'- gGGGUCUgugguggugaGCCUGGuGCCucuGGAGGCc- -3'
miRNA:   3'- -CCCAGAg---------CGGACCuUGGu--CCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 28294 0.69 0.780296
Target:  5'- gGGGUCUgugguggugaGCCUGGuGCCucuGGAGGCc- -3'
miRNA:   3'- -CCCAGAg---------CGGACCuUGGu--CCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 19060 0.69 0.780296
Target:  5'- gGGGUCUgugguggugaGCCUGGuGCCucuGGAGGCc- -3'
miRNA:   3'- -CCCAGAg---------CGGACCuUGGu--CCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 145700 0.69 0.771124
Target:  5'- -uGUCccCGCCUGGGAgCAGGAGcGCGu -3'
miRNA:   3'- ccCAGa-GCGGACCUUgGUCCUU-CGCu -5'
29017 5' -56.6 NC_006146.1 + 139092 0.79 0.279226
Target:  5'- cGGGcCUCGCCUGGAGuuGGGuuGCGu -3'
miRNA:   3'- -CCCaGAGCGGACCUUggUCCuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 22138 0.69 0.780296
Target:  5'- gGGGUCUgugguggugaGCCUGGuGCCucuGGAGGCc- -3'
miRNA:   3'- -CCCAGAg---------CGGACCuUGGu--CCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 167599 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 50034 0.7 0.727519
Target:  5'- aGGGgccccguacucuaUCGCCguuagcaGGGCCAGGAAGCGGa -3'
miRNA:   3'- -CCCag-----------AGCGGac-----CUUGGUCCUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 25216 0.69 0.780296
Target:  5'- gGGGUCUgugguggugaGCCUGGuGCCucuGGAGGCc- -3'
miRNA:   3'- -CCCAGAg---------CGGACCuUGGu--CCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 66782 0.69 0.798248
Target:  5'- gGGGUg-CGaCCUGGAcACCGGGcccAGGCGGc -3'
miRNA:   3'- -CCCAgaGC-GGACCU-UGGUCC---UUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 168531 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 94639 0.71 0.674243
Target:  5'- cGGGUCcaugauggcCGCCcugGGGACCAcGAAGCGGu -3'
miRNA:   3'- -CCCAGa--------GCGGa--CCUUGGUcCUUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.