miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 5' -56.6 NC_006146.1 + 21948 0.68 0.832346
Target:  5'- aGGcCcgCGCCauUGGGGCCAGcAAGCGAg -3'
miRNA:   3'- cCCaGa-GCGG--ACCUUGGUCcUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 166747 0.68 0.804397
Target:  5'- uGGGUUUCGgacgggaCCagcaguggcgagGGGACCAGGAGGgGAg -3'
miRNA:   3'- -CCCAGAGC-------GGa-----------CCUUGGUCCUUCgCU- -5'
29017 5' -56.6 NC_006146.1 + 145700 0.69 0.771124
Target:  5'- -uGUCccCGCCUGGGAgCAGGAGcGCGu -3'
miRNA:   3'- ccCAGa-GCGGACCUUgGUCCUU-CGCu -5'
29017 5' -56.6 NC_006146.1 + 168531 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 169506 0.66 0.904427
Target:  5'- cGGGgcccggCgcgUGCCggGGGACCcGGggGCGu -3'
miRNA:   3'- -CCCa-----Ga--GCGGa-CCUUGGuCCuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 70822 0.67 0.856098
Target:  5'- -aGUCUCuauGUCUGGGGCCAaGGGccaAGCGGg -3'
miRNA:   3'- ccCAGAG---CGGACCUUGGU-CCU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 170100 0.69 0.780296
Target:  5'- gGGGcCggCGCCgcagggGGGGCCGGcGggGCGu -3'
miRNA:   3'- -CCCaGa-GCGGa-----CCUUGGUC-CuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 167599 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 169168 0.68 0.848368
Target:  5'- gGGGcCggCGCCUgcagggGGGGCCGGcGggGCGu -3'
miRNA:   3'- -CCCaGa-GCGGA------CCUUGGUC-CuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 139092 0.79 0.279226
Target:  5'- cGGGcCUCGCCUGGAGuuGGGuuGCGu -3'
miRNA:   3'- -CCCaGAGCGGACCUUggUCCuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 66782 0.69 0.798248
Target:  5'- gGGGUg-CGaCCUGGAcACCGGGcccAGGCGGc -3'
miRNA:   3'- -CCCAgaGC-GGACCU-UGGUCC---UUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 158754 0.68 0.839646
Target:  5'- gGGGUCUCuccgcuGCgaGGAcaugacgGgCGGGAAGCGGu -3'
miRNA:   3'- -CCCAGAG------CGgaCCU-------UgGUCCUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 22138 0.69 0.780296
Target:  5'- gGGGUCUgugguggugaGCCUGGuGCCucuGGAGGCc- -3'
miRNA:   3'- -CCCAGAg---------CGGACCuUGGu--CCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 12905 0.69 0.780296
Target:  5'- gGGGUCUgugguggugaGCCUGGuGCCucuGGAGGCc- -3'
miRNA:   3'- -CCCAGAg---------CGGACCuUGGu--CCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 125941 0.7 0.713875
Target:  5'- aGGUCUUGC--GGAGCCAGGAgaaggggucuGGCGu -3'
miRNA:   3'- cCCAGAGCGgaCCUUGGUCCU----------UCGCu -5'
29017 5' -56.6 NC_006146.1 + 169463 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 167189 0.66 0.910453
Target:  5'- cGG-CgcgCGCCcGGGGucCCGGGggGCGGc -3'
miRNA:   3'- cCCaGa--GCGGaCCUU--GGUCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 170437 0.66 0.904427
Target:  5'- cGGGgcccggCgcgUGCCggGGGACCcGGggGCGu -3'
miRNA:   3'- -CCCa-----Ga--GCGGa-CCUUGGuCCuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 44388 0.66 0.898174
Target:  5'- cGGGgggCGUgUGGGGCCGGGcacGGCGc -3'
miRNA:   3'- -CCCagaGCGgACCUUGGUCCu--UCGCu -5'
29017 5' -56.6 NC_006146.1 + 55652 0.67 0.863632
Target:  5'- gGGGUgcagcaGCC-GGAGCCAGGcGGCGu -3'
miRNA:   3'- -CCCAgag---CGGaCCUUGGUCCuUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.