miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 5' -56.6 NC_006146.1 + 147555 0.67 0.870964
Target:  5'- aGGGUCaccuaaagUCcccccuggacggGCCUGGGgugGCCGGGGAGgGGu -3'
miRNA:   3'- -CCCAG--------AG------------CGGACCU---UGGUCCUUCgCU- -5'
29017 5' -56.6 NC_006146.1 + 41065 0.67 0.885002
Target:  5'- gGGGcCUCGgggUGGAgggagGCCAGGGacAGCGAg -3'
miRNA:   3'- -CCCaGAGCgg-ACCU-----UGGUCCU--UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 141707 0.67 0.878089
Target:  5'- uGGGgagacaGCUgaggGGGGCCGGGGAGgGAg -3'
miRNA:   3'- -CCCagag--CGGa---CCUUGGUCCUUCgCU- -5'
29017 5' -56.6 NC_006146.1 + 152836 0.67 0.875974
Target:  5'- uGGGUCUC-CCUuaggcuuggauggcGGAGCCGgcgaugacgguGGAGGUGGc -3'
miRNA:   3'- -CCCAGAGcGGA--------------CCUUGGU-----------CCUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 149758 0.67 0.875974
Target:  5'- uGGGUCUC-CCUuaggcuuggauggcGGAGCCGgcgaugacgguGGAGGUGGc -3'
miRNA:   3'- -CCCAGAGcGGA--------------CCUUGGU-----------CCUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 143603 0.67 0.875974
Target:  5'- uGGGUCUC-CCUuaggcuuggauggcGGAGCCGgcgaugacgguGGAGGUGGc -3'
miRNA:   3'- -CCCAGAGcGGA--------------CCUUGGU-----------CCUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 156788 0.67 0.870964
Target:  5'- aGGGUCaccuaaagUCcccccuggacggGCCUGGGgugGCCGGGGAGgGGu -3'
miRNA:   3'- -CCCAG--------AG------------CGGACCU---UGGUCCUUCgCU- -5'
29017 5' -56.6 NC_006146.1 + 153710 0.67 0.870964
Target:  5'- aGGGUCaccuaaagUCcccccuggacggGCCUGGGgugGCCGGGGAGgGGu -3'
miRNA:   3'- -CCCAG--------AG------------CGGACCU---UGGUCCUUCgCU- -5'
29017 5' -56.6 NC_006146.1 + 150633 0.67 0.870964
Target:  5'- aGGGUCaccuaaagUCcccccuggacggGCCUGGGgugGCCGGGGAGgGGu -3'
miRNA:   3'- -CCCAG--------AG------------CGGACCU---UGGUCCUUCgCU- -5'
29017 5' -56.6 NC_006146.1 + 15033 0.66 0.891698
Target:  5'- aGGGg--CGCCUGGccagggcccGCCGGGccuGCGAg -3'
miRNA:   3'- -CCCagaGCGGACCu--------UGGUCCuu-CGCU- -5'
29017 5' -56.6 NC_006146.1 + 144784 0.66 0.904427
Target:  5'- uGGGgagacaaGCUgaggGGGGCCGGGGAGgGAg -3'
miRNA:   3'- -CCCagag---CGGa---CCUUGGUCCUUCgCU- -5'
29017 5' -56.6 NC_006146.1 + 147862 0.66 0.904427
Target:  5'- uGGGgagacaaGCUgaggGGGGCCGGGGAGgGAg -3'
miRNA:   3'- -CCCagag---CGGa---CCUUGGUCCUUCgCU- -5'
29017 5' -56.6 NC_006146.1 + 89974 0.66 0.91625
Target:  5'- uGGGcCUgG-CUGG-GCCGGGAGGCu- -3'
miRNA:   3'- -CCCaGAgCgGACCuUGGUCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 48705 0.66 0.91625
Target:  5'- gGGGaCUaCGUCUGGGAgUgAGGAGGCa- -3'
miRNA:   3'- -CCCaGA-GCGGACCUU-GgUCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 76384 0.66 0.910453
Target:  5'- aGGG-CgCGCCgggggaGGGACCGGGGgcgccgacGGCGGc -3'
miRNA:   3'- -CCCaGaGCGGa-----CCUUGGUCCU--------UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 64233 0.66 0.910453
Target:  5'- --aUCUgCGCCUGG-GCCGGGgcGgGAg -3'
miRNA:   3'- cccAGA-GCGGACCuUGGUCCuuCgCU- -5'
29017 5' -56.6 NC_006146.1 + 136740 0.66 0.906864
Target:  5'- gGGGgcgcaccccccaccCUCGCCggGGcuCCGGGAGGCc- -3'
miRNA:   3'- -CCCa-------------GAGCGGa-CCuuGGUCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 157096 0.66 0.904427
Target:  5'- uGGGgagacaaGCUgaggGGGGCCGGGGAGgGAg -3'
miRNA:   3'- -CCCagag---CGGa---CCUUGGUCCUUCgCU- -5'
29017 5' -56.6 NC_006146.1 + 154018 0.66 0.904427
Target:  5'- uGGGgagacaaGCUgaggGGGGCCGGGGAGgGAg -3'
miRNA:   3'- -CCCagag---CGGa---CCUUGGUCCUUCgCU- -5'
29017 5' -56.6 NC_006146.1 + 150940 0.66 0.904427
Target:  5'- uGGGgagacaaGCUgaggGGGGCCGGGGAGgGAg -3'
miRNA:   3'- -CCCagag---CGGa---CCUUGGUCCUUCgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.