miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29018 3' -57.2 NC_006146.1 + 36680 0.66 0.900299
Target:  5'- ----aUGGGCCUGCAGUccacuaaggGGGGACCa- -3'
miRNA:   3'- gcauaGCCUGGGUGUCG---------UCCCUGGac -5'
29018 3' -57.2 NC_006146.1 + 157363 0.66 0.893907
Target:  5'- ----cCGGcGCCUGCAGCAGGuuCCUGu -3'
miRNA:   3'- gcauaGCC-UGGGUGUCGUCCcuGGAC- -5'
29018 3' -57.2 NC_006146.1 + 126514 0.66 0.893906
Target:  5'- cCGUGccCGGcCCCACacgccccccgGGCGGGGGUCUGg -3'
miRNA:   3'- -GCAUa-GCCuGGGUG----------UCGUCCCUGGAC- -5'
29018 3' -57.2 NC_006146.1 + 167308 0.66 0.887294
Target:  5'- ----cCGGcGCCUGCAGgGGGGGCCg- -3'
miRNA:   3'- gcauaGCC-UGGGUGUCgUCCCUGGac -5'
29018 3' -57.2 NC_006146.1 + 168240 0.66 0.887294
Target:  5'- ----cCGGcGCCUGCAGgGGGGGCCg- -3'
miRNA:   3'- gcauaGCC-UGGGUGUCgUCCCUGGac -5'
29018 3' -57.2 NC_006146.1 + 169172 0.66 0.887294
Target:  5'- ----cCGGcGCCUGCAGgGGGGGCCg- -3'
miRNA:   3'- gcauaGCC-UGGGUGUCgUCCCUGGac -5'
29018 3' -57.2 NC_006146.1 + 124513 0.66 0.880463
Target:  5'- gGUcUCGG-CCCugGcgaggGaCGGGGGCCUGg -3'
miRNA:   3'- gCAuAGCCuGGGugU-----C-GUCCCUGGAC- -5'
29018 3' -57.2 NC_006146.1 + 110875 0.66 0.880463
Target:  5'- gCGUcUCGGGCUCGggcgcaGGCGGGGACg-- -3'
miRNA:   3'- -GCAuAGCCUGGGUg-----UCGUCCCUGgac -5'
29018 3' -57.2 NC_006146.1 + 139076 0.66 0.87342
Target:  5'- ----aCGGGCCCugGuggcGCGGGGGgCUGu -3'
miRNA:   3'- gcauaGCCUGGGugU----CGUCCCUgGAC- -5'
29018 3' -57.2 NC_006146.1 + 123691 0.66 0.87342
Target:  5'- uCGUggCGGAg--GCGGcCAGGGGCCUGg -3'
miRNA:   3'- -GCAuaGCCUgggUGUC-GUCCCUGGAC- -5'
29018 3' -57.2 NC_006146.1 + 39023 0.66 0.869094
Target:  5'- uGUGUCgcaacccaaacauggGGGCCaGCAgGCAGGGGcCCUGu -3'
miRNA:   3'- gCAUAG---------------CCUGGgUGU-CGUCCCU-GGAC- -5'
29018 3' -57.2 NC_006146.1 + 146005 0.67 0.857957
Target:  5'- -uUAUCuGGCCCACcgaggGGCAGGGGggcagcuCCUGg -3'
miRNA:   3'- gcAUAGcCUGGGUG-----UCGUCCCU-------GGAC- -5'
29018 3' -57.2 NC_006146.1 + 44526 0.67 0.851061
Target:  5'- --gGUgGGAUCCAUGGCAGGauauCCUGg -3'
miRNA:   3'- gcaUAgCCUGGGUGUCGUCCcu--GGAC- -5'
29018 3' -57.2 NC_006146.1 + 129941 0.67 0.843218
Target:  5'- aCGg--CGG-UCUACGGCAcGGACCUGg -3'
miRNA:   3'- -GCauaGCCuGGGUGUCGUcCCUGGAC- -5'
29018 3' -57.2 NC_006146.1 + 101418 0.67 0.826982
Target:  5'- --gGUCGGGCCUggcCAuGCAGGGcauCCUGg -3'
miRNA:   3'- gcaUAGCCUGGGu--GU-CGUCCCu--GGAC- -5'
29018 3' -57.2 NC_006146.1 + 47002 0.67 0.826153
Target:  5'- --cGUCGGACCgGCAGCGGcccggucGGACUc- -3'
miRNA:   3'- gcaUAGCCUGGgUGUCGUC-------CCUGGac -5'
29018 3' -57.2 NC_006146.1 + 25020 0.68 0.818605
Target:  5'- aGUAga-GGCCCGCGGCcauuGGGGCCa- -3'
miRNA:   3'- gCAUagcCUGGGUGUCGu---CCCUGGac -5'
29018 3' -57.2 NC_006146.1 + 18865 0.68 0.818605
Target:  5'- aGUAga-GGCCCGCGGCcauuGGGGCCa- -3'
miRNA:   3'- gCAUagcCUGGGUGUCGu---CCCUGGac -5'
29018 3' -57.2 NC_006146.1 + 15787 0.68 0.818605
Target:  5'- aGUAga-GGCCCGCGGCcauuGGGGCCa- -3'
miRNA:   3'- gCAUagcCUGGGUGUCGu---CCCUGGac -5'
29018 3' -57.2 NC_006146.1 + 28098 0.68 0.818605
Target:  5'- aGUAga-GGCCCGCGGCcauuGGGGCCa- -3'
miRNA:   3'- gCAUagcCUGGGUGUCGu---CCCUGGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.