Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 36680 | 0.66 | 0.900299 |
Target: 5'- ----aUGGGCCUGCAGUccacuaaggGGGGACCa- -3' miRNA: 3'- gcauaGCCUGGGUGUCG---------UCCCUGGac -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 168240 | 0.66 | 0.887294 |
Target: 5'- ----cCGGcGCCUGCAGgGGGGGCCg- -3' miRNA: 3'- gcauaGCC-UGGGUGUCgUCCCUGGac -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 157363 | 0.66 | 0.893907 |
Target: 5'- ----cCGGcGCCUGCAGCAGGuuCCUGu -3' miRNA: 3'- gcauaGCC-UGGGUGUCGUCCcuGGAC- -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 167308 | 0.66 | 0.887294 |
Target: 5'- ----cCGGcGCCUGCAGgGGGGGCCg- -3' miRNA: 3'- gcauaGCC-UGGGUGUCgUCCCUGGac -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 39023 | 0.66 | 0.869094 |
Target: 5'- uGUGUCgcaacccaaacauggGGGCCaGCAgGCAGGGGcCCUGu -3' miRNA: 3'- gCAUAG---------------CCUGGgUGU-CGUCCCU-GGAC- -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 169172 | 0.66 | 0.887294 |
Target: 5'- ----cCGGcGCCUGCAGgGGGGGCCg- -3' miRNA: 3'- gcauaGCC-UGGGUGUCgUCCCUGGac -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 139076 | 0.66 | 0.87342 |
Target: 5'- ----aCGGGCCCugGuggcGCGGGGGgCUGu -3' miRNA: 3'- gcauaGCCUGGGugU----CGUCCCUgGAC- -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 126514 | 0.66 | 0.893906 |
Target: 5'- cCGUGccCGGcCCCACacgccccccgGGCGGGGGUCUGg -3' miRNA: 3'- -GCAUa-GCCuGGGUG----------UCGUCCCUGGAC- -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 124513 | 0.66 | 0.880463 |
Target: 5'- gGUcUCGG-CCCugGcgaggGaCGGGGGCCUGg -3' miRNA: 3'- gCAuAGCCuGGGugU-----C-GUCCCUGGAC- -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 110875 | 0.66 | 0.880463 |
Target: 5'- gCGUcUCGGGCUCGggcgcaGGCGGGGACg-- -3' miRNA: 3'- -GCAuAGCCUGGGUg-----UCGUCCCUGgac -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 123691 | 0.66 | 0.87342 |
Target: 5'- uCGUggCGGAg--GCGGcCAGGGGCCUGg -3' miRNA: 3'- -GCAuaGCCUgggUGUC-GUCCCUGGAC- -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 44526 | 0.67 | 0.851061 |
Target: 5'- --gGUgGGAUCCAUGGCAGGauauCCUGg -3' miRNA: 3'- gcaUAgCCUGGGUGUCGUCCcu--GGAC- -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 47002 | 0.67 | 0.826153 |
Target: 5'- --cGUCGGACCgGCAGCGGcccggucGGACUc- -3' miRNA: 3'- gcaUAGCCUGGgUGUCGUC-------CCUGGac -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 129941 | 0.67 | 0.843218 |
Target: 5'- aCGg--CGG-UCUACGGCAcGGACCUGg -3' miRNA: 3'- -GCauaGCCuGGGUGUCGUcCCUGGAC- -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 101418 | 0.67 | 0.826982 |
Target: 5'- --gGUCGGGCCUggcCAuGCAGGGcauCCUGg -3' miRNA: 3'- gcaUAGCCUGGGu--GU-CGUCCCu--GGAC- -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 146005 | 0.67 | 0.857957 |
Target: 5'- -uUAUCuGGCCCACcgaggGGCAGGGGggcagcuCCUGg -3' miRNA: 3'- gcAUAGcCUGGGUG-----UCGUCCCU-------GGAC- -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 25020 | 0.68 | 0.818605 |
Target: 5'- aGUAga-GGCCCGCGGCcauuGGGGCCa- -3' miRNA: 3'- gCAUagcCUGGGUGUCGu---CCCUGGac -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 18865 | 0.68 | 0.818605 |
Target: 5'- aGUAga-GGCCCGCGGCcauuGGGGCCa- -3' miRNA: 3'- gCAUagcCUGGGUGUCGu---CCCUGGac -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 12708 | 0.68 | 0.818605 |
Target: 5'- aGUAga-GGCCCGCGGCcauuGGGGCCa- -3' miRNA: 3'- gCAUagcCUGGGUGUCGu---CCCUGGac -5' |
|||||||
29018 | 3' | -57.2 | NC_006146.1 | + | 14837 | 0.68 | 0.801367 |
Target: 5'- gGUcUCGGGCCCGgGGCcgcGGGaGGCCg- -3' miRNA: 3'- gCAuAGCCUGGGUgUCG---UCC-CUGGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home