miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29018 3' -57.2 NC_006146.1 + 28098 0.68 0.818605
Target:  5'- aGUAga-GGCCCGCGGCcauuGGGGCCa- -3'
miRNA:   3'- gCAUagcCUGGGUGUCGu---CCCUGGac -5'
29018 3' -57.2 NC_006146.1 + 36696 0.68 0.818605
Target:  5'- aGUGUUGGcCauaCACAcCAGGGGCCUa -3'
miRNA:   3'- gCAUAGCCuGg--GUGUcGUCCCUGGAc -5'
29018 3' -57.2 NC_006146.1 + 55593 0.68 0.810064
Target:  5'- cCGUAggucUGGuCCCAgAGCAGGG-CCUc -3'
miRNA:   3'- -GCAUa---GCCuGGGUgUCGUCCCuGGAc -5'
29018 3' -57.2 NC_006146.1 + 169577 0.68 0.810064
Target:  5'- -----gGGGCCCGagcgcgcguCGGguGGGGCCUGa -3'
miRNA:   3'- gcauagCCUGGGU---------GUCguCCCUGGAC- -5'
29018 3' -57.2 NC_006146.1 + 167712 0.68 0.810064
Target:  5'- -----gGGGCCCGagcgcgcguCGGguGGGGCCUGa -3'
miRNA:   3'- gcauagCCUGGGU---------GUCguCCCUGGAC- -5'
29018 3' -57.2 NC_006146.1 + 14837 0.68 0.801367
Target:  5'- gGUcUCGGGCCCGgGGCcgcGGGaGGCCg- -3'
miRNA:   3'- gCAuAGCCUGGGUgUCG---UCC-CUGGac -5'
29018 3' -57.2 NC_006146.1 + 60121 0.68 0.783539
Target:  5'- uGUGcaaGGGgCCGgGGgAGGGACCUGg -3'
miRNA:   3'- gCAUag-CCUgGGUgUCgUCCCUGGAC- -5'
29018 3' -57.2 NC_006146.1 + 126184 0.68 0.774424
Target:  5'- cCGcAUCaGGCCgGcCAGCGGGGGCCa- -3'
miRNA:   3'- -GCaUAGcCUGGgU-GUCGUCCCUGGac -5'
29018 3' -57.2 NC_006146.1 + 108995 0.68 0.774424
Target:  5'- -----gGGACCCACGcuCAGGGGCUUGu -3'
miRNA:   3'- gcauagCCUGGGUGUc-GUCCCUGGAC- -5'
29018 3' -57.2 NC_006146.1 + 2636 0.68 0.774424
Target:  5'- aCGgcuUCGu-CCaCACGGCGGGGACCa- -3'
miRNA:   3'- -GCau-AGCcuGG-GUGUCGUCCCUGGac -5'
29018 3' -57.2 NC_006146.1 + 130178 0.69 0.746377
Target:  5'- ----aCGGGCCCGCcuGCccGGACCUGa -3'
miRNA:   3'- gcauaGCCUGGGUGu-CGucCCUGGAC- -5'
29018 3' -57.2 NC_006146.1 + 75706 0.69 0.736824
Target:  5'- -----aGGAgCUGCAgcGCAGGGACCUGg -3'
miRNA:   3'- gcauagCCUgGGUGU--CGUCCCUGGAC- -5'
29018 3' -57.2 NC_006146.1 + 86315 0.69 0.717462
Target:  5'- aGUAggaGGCCCugGGCAGGGuCUUGa -3'
miRNA:   3'- gCAUagcCUGGGugUCGUCCCuGGAC- -5'
29018 3' -57.2 NC_006146.1 + 45507 0.7 0.69683
Target:  5'- -cUGUUGGccaagacGgCCACGGUGGGGGCCUGg -3'
miRNA:   3'- gcAUAGCC-------UgGGUGUCGUCCCUGGAC- -5'
29018 3' -57.2 NC_006146.1 + 64878 0.7 0.65796
Target:  5'- uGUGUuuUGaGGCCUACGaCGGGGACCUGa -3'
miRNA:   3'- gCAUA--GC-CUGGGUGUcGUCCCUGGAC- -5'
29018 3' -57.2 NC_006146.1 + 170506 0.72 0.597723
Target:  5'- ----cCGGACCCcCAGCGcgcggcgggcGGGGCCUGa -3'
miRNA:   3'- gcauaGCCUGGGuGUCGU----------CCCUGGAC- -5'
29018 3' -57.2 NC_006146.1 + 159044 0.72 0.58673
Target:  5'- --cGUCGGGCCCGCcccaagcccgagaAGCAGGGcCCg- -3'
miRNA:   3'- gcaUAGCCUGGGUG-------------UCGUCCCuGGac -5'
29018 3' -57.2 NC_006146.1 + 34189 0.73 0.53834
Target:  5'- ----cCGGACCCuggugccaGGCAGGGACCUc -3'
miRNA:   3'- gcauaGCCUGGGug------UCGUCCCUGGAc -5'
29018 3' -57.2 NC_006146.1 + 138019 0.73 0.53834
Target:  5'- ----cCGGACCCuggugccaGGCAGGGACCUc -3'
miRNA:   3'- gcauaGCCUGGGug------UCGUCCCUGGAc -5'
29018 3' -57.2 NC_006146.1 + 161772 0.75 0.418329
Target:  5'- -----gGGGCgCCugGGCGGGGGCCUGa -3'
miRNA:   3'- gcauagCCUG-GGugUCGUCCCUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.