miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29018 5' -57.6 NC_006146.1 + 14295 0.66 0.851262
Target:  5'- uGCAGcGCCCugucccuggagcUGGCgCACCUGCUgGa- -3'
miRNA:   3'- cUGUCuUGGG------------ACCG-GUGGACGAgCau -5'
29018 5' -57.6 NC_006146.1 + 2695 0.66 0.851262
Target:  5'- cGGCAGcACCCUGGCCuuuuCCccUUCGUu -3'
miRNA:   3'- -CUGUCuUGGGACCGGu---GGacGAGCAu -5'
29018 5' -57.6 NC_006146.1 + 102137 0.66 0.850474
Target:  5'- uGACAGAGCgcaccgccugaagCUUGGCCACCUGggcCUCc-- -3'
miRNA:   3'- -CUGUCUUG-------------GGACCGGUGGAC---GAGcau -5'
29018 5' -57.6 NC_006146.1 + 111308 0.66 0.850474
Target:  5'- uGACGGGggacgccGCCCUccagaucGCCACCUGCgcCGUGg -3'
miRNA:   3'- -CUGUCU-------UGGGAc------CGGUGGACGa-GCAU- -5'
29018 5' -57.6 NC_006146.1 + 10569 0.66 0.843293
Target:  5'- uGACAuGGACCgUGGCCAgCCUGagCGUc -3'
miRNA:   3'- -CUGU-CUUGGgACCGGU-GGACgaGCAu -5'
29018 5' -57.6 NC_006146.1 + 103112 0.66 0.835133
Target:  5'- gGGCAGAG-CCUGGCCGCCgucaCGUc -3'
miRNA:   3'- -CUGUCUUgGGACCGGUGGacgaGCAu -5'
29018 5' -57.6 NC_006146.1 + 61182 0.66 0.835133
Target:  5'- -uCAG-GCCCUGGCUcCUUGCUCa-- -3'
miRNA:   3'- cuGUCuUGGGACCGGuGGACGAGcau -5'
29018 5' -57.6 NC_006146.1 + 131609 0.66 0.818269
Target:  5'- cACAGGcCUCUGcuGCCACCUGC-CGUc -3'
miRNA:   3'- cUGUCUuGGGAC--CGGUGGACGaGCAu -5'
29018 5' -57.6 NC_006146.1 + 168516 0.66 0.818269
Target:  5'- aACAGAGCCCUcuggaagcccgcGGaCGCCUgucccgGCUCGUAc -3'
miRNA:   3'- cUGUCUUGGGA------------CCgGUGGA------CGAGCAU- -5'
29018 5' -57.6 NC_006146.1 + 61970 0.67 0.80958
Target:  5'- cACGGGggccguugagGCCCacGUCACCUGCUCGg- -3'
miRNA:   3'- cUGUCU----------UGGGacCGGUGGACGAGCau -5'
29018 5' -57.6 NC_006146.1 + 139380 0.67 0.80958
Target:  5'- aGCAGAgcaGCCUcuaaUGGUCGCCUGCUUu-- -3'
miRNA:   3'- cUGUCU---UGGG----ACCGGUGGACGAGcau -5'
29018 5' -57.6 NC_006146.1 + 126877 0.67 0.782585
Target:  5'- aGCGGGGCCCUcGGCCGCCccCUCc-- -3'
miRNA:   3'- cUGUCUUGGGA-CCGGUGGacGAGcau -5'
29018 5' -57.6 NC_006146.1 + 64730 0.67 0.773306
Target:  5'- uGCAGAGCCCugcguucuggaUGGCCugCaUGCgagCGUc -3'
miRNA:   3'- cUGUCUUGGG-----------ACCGGugG-ACGa--GCAu -5'
29018 5' -57.6 NC_006146.1 + 22819 0.67 0.773306
Target:  5'- gGGCGGGgucuuuGCCCUGGUgcuCCUGCUCa-- -3'
miRNA:   3'- -CUGUCU------UGGGACCGgu-GGACGAGcau -5'
29018 5' -57.6 NC_006146.1 + 133019 0.67 0.773306
Target:  5'- aGGCAGGACUCUcccaGCCcgGCCUGCUCu-- -3'
miRNA:   3'- -CUGUCUUGGGAc---CGG--UGGACGAGcau -5'
29018 5' -57.6 NC_006146.1 + 124158 0.67 0.763901
Target:  5'- aGGCgAGGACCCUGGCCagcguggccuccGCCcGcCUCGg- -3'
miRNA:   3'- -CUG-UCUUGGGACCGG------------UGGaC-GAGCau -5'
29018 5' -57.6 NC_006146.1 + 115376 0.67 0.762953
Target:  5'- cGGCGGAgcuggagGCCCUGGCCGCUcGCgugCa-- -3'
miRNA:   3'- -CUGUCU-------UGGGACCGGUGGaCGa--Gcau -5'
29018 5' -57.6 NC_006146.1 + 116239 0.68 0.75438
Target:  5'- cGGCGGGAUUCggGGCCAgCUGCUgGg- -3'
miRNA:   3'- -CUGUCUUGGGa-CCGGUgGACGAgCau -5'
29018 5' -57.6 NC_006146.1 + 58687 0.68 0.75438
Target:  5'- gGAC-GAGCCCUGGUCggacugguACCUGUUUGa- -3'
miRNA:   3'- -CUGuCUUGGGACCGG--------UGGACGAGCau -5'
29018 5' -57.6 NC_006146.1 + 20230 0.68 0.754379
Target:  5'- uGCAGGauucgGCCCUGGUCAuggaUCUGCUCa-- -3'
miRNA:   3'- cUGUCU-----UGGGACCGGU----GGACGAGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.