Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29018 | 5' | -57.6 | NC_006146.1 | + | 55109 | 1.06 | 0.003114 |
Target: 5'- gGACAGAACCCUGGCCACCUGCUCGUAc -3' miRNA: 3'- -CUGUCUUGGGACCGGUGGACGAGCAU- -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 55448 | 0.76 | 0.295456 |
Target: 5'- cGACAGcaguACCgUGGCCACCcGCUCGa- -3' miRNA: 3'- -CUGUCu---UGGgACCGGUGGaCGAGCau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 56957 | 0.74 | 0.377496 |
Target: 5'- cGGCAGcauacucucaagaGACCCUgacGGCCACCUGCUgGUu -3' miRNA: 3'- -CUGUC-------------UUGGGA---CCGGUGGACGAgCAu -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 150789 | 0.73 | 0.456807 |
Target: 5'- aGCAGGugCCgGGCCACCguguccaGCUUGUAg -3' miRNA: 3'- cUGUCUugGGaCCGGUGGa------CGAGCAU- -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 62829 | 0.72 | 0.484857 |
Target: 5'- aAUGGAACCCUGGCCGCCgugGC-Ca-- -3' miRNA: 3'- cUGUCUUGGGACCGGUGGa--CGaGcau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 138756 | 0.71 | 0.533322 |
Target: 5'- aGCGGccugccacGGCCCUGGCUaACCUGCUaCGUGc -3' miRNA: 3'- cUGUC--------UUGGGACCGG-UGGACGA-GCAU- -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 83723 | 0.71 | 0.573292 |
Target: 5'- -gUAGGACCCUGGCCAaaaacaacccCCUGUgggcCGUGa -3' miRNA: 3'- cuGUCUUGGGACCGGU----------GGACGa---GCAU- -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 166544 | 0.7 | 0.613922 |
Target: 5'- cGCGGGGCCgUGGCCACgucgcugaagagCUGCUCa-- -3' miRNA: 3'- cUGUCUUGGgACCGGUG------------GACGAGcau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 123237 | 0.7 | 0.624131 |
Target: 5'- cACGaGACCCUGGCCGCCgcGCUgGg- -3' miRNA: 3'- cUGUcUUGGGACCGGUGGa-CGAgCau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 40365 | 0.7 | 0.634347 |
Target: 5'- cGGCGGAGaaggccCCCUGGUCGCCgcccgGCgCGUAg -3' miRNA: 3'- -CUGUCUU------GGGACCGGUGGa----CGaGCAU- -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 122421 | 0.69 | 0.644561 |
Target: 5'- cACGcGGAUCCUGGCCGCCaUGCuaUCGg- -3' miRNA: 3'- cUGU-CUUGGGACCGGUGG-ACG--AGCau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 131754 | 0.69 | 0.664951 |
Target: 5'- uGGgAGGACCC-GGCCACCaUGCuaUCGUu -3' miRNA: 3'- -CUgUCUUGGGaCCGGUGG-ACG--AGCAu -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 59899 | 0.69 | 0.675111 |
Target: 5'- -cCAGcACgCUGGCCaACCUGCUgGUGc -3' miRNA: 3'- cuGUCuUGgGACCGG-UGGACGAgCAU- -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 114781 | 0.69 | 0.675111 |
Target: 5'- -uCGGGGCCCgcGGCCACCUucGCcuUCGUGg -3' miRNA: 3'- cuGUCUUGGGa-CCGGUGGA--CG--AGCAU- -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 51367 | 0.69 | 0.695317 |
Target: 5'- gGGCGGGAUCUUGGUCACCcGCUUc-- -3' miRNA: 3'- -CUGUCUUGGGACCGGUGGaCGAGcau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 115204 | 0.68 | 0.715311 |
Target: 5'- gGGCAGAGCCCcccggcGGCgGCCgUGCcCGUGc -3' miRNA: 3'- -CUGUCUUGGGa-----CCGgUGG-ACGaGCAU- -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 109419 | 0.68 | 0.735023 |
Target: 5'- -uCGGAGCCCUGGUgAuCCUGCcacUCGg- -3' miRNA: 3'- cuGUCUUGGGACCGgU-GGACG---AGCau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 10209 | 0.68 | 0.753421 |
Target: 5'- aGACGGAccugccucuaccgGCCCUGGUCAUgUGC-CGg- -3' miRNA: 3'- -CUGUCU-------------UGGGACCGGUGgACGaGCau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 20230 | 0.68 | 0.754379 |
Target: 5'- uGCAGGauucgGCCCUGGUCAuggaUCUGCUCa-- -3' miRNA: 3'- cUGUCU-----UGGGACCGGU----GGACGAGcau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 58687 | 0.68 | 0.75438 |
Target: 5'- gGAC-GAGCCCUGGUCggacugguACCUGUUUGa- -3' miRNA: 3'- -CUGuCUUGGGACCGG--------UGGACGAGCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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