miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29018 5' -57.6 NC_006146.1 + 10209 0.68 0.753421
Target:  5'- aGACGGAccugccucuaccgGCCCUGGUCAUgUGC-CGg- -3'
miRNA:   3'- -CUGUCU-------------UGGGACCGGUGgACGaGCau -5'
29018 5' -57.6 NC_006146.1 + 109419 0.68 0.735023
Target:  5'- -uCGGAGCCCUGGUgAuCCUGCcacUCGg- -3'
miRNA:   3'- cuGUCUUGGGACCGgU-GGACG---AGCau -5'
29018 5' -57.6 NC_006146.1 + 115204 0.68 0.715311
Target:  5'- gGGCAGAGCCCcccggcGGCgGCCgUGCcCGUGc -3'
miRNA:   3'- -CUGUCUUGGGa-----CCGgUGG-ACGaGCAU- -5'
29018 5' -57.6 NC_006146.1 + 51367 0.69 0.695317
Target:  5'- gGGCGGGAUCUUGGUCACCcGCUUc-- -3'
miRNA:   3'- -CUGUCUUGGGACCGGUGGaCGAGcau -5'
29018 5' -57.6 NC_006146.1 + 114781 0.69 0.675111
Target:  5'- -uCGGGGCCCgcGGCCACCUucGCcuUCGUGg -3'
miRNA:   3'- cuGUCUUGGGa-CCGGUGGA--CG--AGCAU- -5'
29018 5' -57.6 NC_006146.1 + 59899 0.69 0.675111
Target:  5'- -cCAGcACgCUGGCCaACCUGCUgGUGc -3'
miRNA:   3'- cuGUCuUGgGACCGG-UGGACGAgCAU- -5'
29018 5' -57.6 NC_006146.1 + 131754 0.69 0.664951
Target:  5'- uGGgAGGACCC-GGCCACCaUGCuaUCGUu -3'
miRNA:   3'- -CUgUCUUGGGaCCGGUGG-ACG--AGCAu -5'
29018 5' -57.6 NC_006146.1 + 122421 0.69 0.644561
Target:  5'- cACGcGGAUCCUGGCCGCCaUGCuaUCGg- -3'
miRNA:   3'- cUGU-CUUGGGACCGGUGG-ACG--AGCau -5'
29018 5' -57.6 NC_006146.1 + 40365 0.7 0.634347
Target:  5'- cGGCGGAGaaggccCCCUGGUCGCCgcccgGCgCGUAg -3'
miRNA:   3'- -CUGUCUU------GGGACCGGUGGa----CGaGCAU- -5'
29018 5' -57.6 NC_006146.1 + 123237 0.7 0.624131
Target:  5'- cACGaGACCCUGGCCGCCgcGCUgGg- -3'
miRNA:   3'- cUGUcUUGGGACCGGUGGa-CGAgCau -5'
29018 5' -57.6 NC_006146.1 + 166544 0.7 0.613922
Target:  5'- cGCGGGGCCgUGGCCACgucgcugaagagCUGCUCa-- -3'
miRNA:   3'- cUGUCUUGGgACCGGUG------------GACGAGcau -5'
29018 5' -57.6 NC_006146.1 + 83723 0.71 0.573292
Target:  5'- -gUAGGACCCUGGCCAaaaacaacccCCUGUgggcCGUGa -3'
miRNA:   3'- cuGUCUUGGGACCGGU----------GGACGa---GCAU- -5'
29018 5' -57.6 NC_006146.1 + 138756 0.71 0.533322
Target:  5'- aGCGGccugccacGGCCCUGGCUaACCUGCUaCGUGc -3'
miRNA:   3'- cUGUC--------UUGGGACCGG-UGGACGA-GCAU- -5'
29018 5' -57.6 NC_006146.1 + 62829 0.72 0.484857
Target:  5'- aAUGGAACCCUGGCCGCCgugGC-Ca-- -3'
miRNA:   3'- cUGUCUUGGGACCGGUGGa--CGaGcau -5'
29018 5' -57.6 NC_006146.1 + 150789 0.73 0.456807
Target:  5'- aGCAGGugCCgGGCCACCguguccaGCUUGUAg -3'
miRNA:   3'- cUGUCUugGGaCCGGUGGa------CGAGCAU- -5'
29018 5' -57.6 NC_006146.1 + 56957 0.74 0.377496
Target:  5'- cGGCAGcauacucucaagaGACCCUgacGGCCACCUGCUgGUu -3'
miRNA:   3'- -CUGUC-------------UUGGGA---CCGGUGGACGAgCAu -5'
29018 5' -57.6 NC_006146.1 + 55448 0.76 0.295456
Target:  5'- cGACAGcaguACCgUGGCCACCcGCUCGa- -3'
miRNA:   3'- -CUGUCu---UGGgACCGGUGGaCGAGCau -5'
29018 5' -57.6 NC_006146.1 + 55109 1.06 0.003114
Target:  5'- gGACAGAACCCUGGCCACCUGCUCGUAc -3'
miRNA:   3'- -CUGUCUUGGGACCGGUGGACGAGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.