miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29018 5' -57.6 NC_006146.1 + 2695 0.66 0.851262
Target:  5'- cGGCAGcACCCUGGCCuuuuCCccUUCGUu -3'
miRNA:   3'- -CUGUCuUGGGACCGGu---GGacGAGCAu -5'
29018 5' -57.6 NC_006146.1 + 10209 0.68 0.753421
Target:  5'- aGACGGAccugccucuaccgGCCCUGGUCAUgUGC-CGg- -3'
miRNA:   3'- -CUGUCU-------------UGGGACCGGUGgACGaGCau -5'
29018 5' -57.6 NC_006146.1 + 10569 0.66 0.843293
Target:  5'- uGACAuGGACCgUGGCCAgCCUGagCGUc -3'
miRNA:   3'- -CUGU-CUUGGgACCGGU-GGACgaGCAu -5'
29018 5' -57.6 NC_006146.1 + 14295 0.66 0.851262
Target:  5'- uGCAGcGCCCugucccuggagcUGGCgCACCUGCUgGa- -3'
miRNA:   3'- cUGUCuUGGG------------ACCG-GUGGACGAgCau -5'
29018 5' -57.6 NC_006146.1 + 20230 0.68 0.754379
Target:  5'- uGCAGGauucgGCCCUGGUCAuggaUCUGCUCa-- -3'
miRNA:   3'- cUGUCU-----UGGGACCGGU----GGACGAGcau -5'
29018 5' -57.6 NC_006146.1 + 22819 0.67 0.773306
Target:  5'- gGGCGGGgucuuuGCCCUGGUgcuCCUGCUCa-- -3'
miRNA:   3'- -CUGUCU------UGGGACCGgu-GGACGAGcau -5'
29018 5' -57.6 NC_006146.1 + 40365 0.7 0.634347
Target:  5'- cGGCGGAGaaggccCCCUGGUCGCCgcccgGCgCGUAg -3'
miRNA:   3'- -CUGUCUU------GGGACCGGUGGa----CGaGCAU- -5'
29018 5' -57.6 NC_006146.1 + 51367 0.69 0.695317
Target:  5'- gGGCGGGAUCUUGGUCACCcGCUUc-- -3'
miRNA:   3'- -CUGUCUUGGGACCGGUGGaCGAGcau -5'
29018 5' -57.6 NC_006146.1 + 55109 1.06 0.003114
Target:  5'- gGACAGAACCCUGGCCACCUGCUCGUAc -3'
miRNA:   3'- -CUGUCUUGGGACCGGUGGACGAGCAU- -5'
29018 5' -57.6 NC_006146.1 + 55448 0.76 0.295456
Target:  5'- cGACAGcaguACCgUGGCCACCcGCUCGa- -3'
miRNA:   3'- -CUGUCu---UGGgACCGGUGGaCGAGCau -5'
29018 5' -57.6 NC_006146.1 + 56957 0.74 0.377496
Target:  5'- cGGCAGcauacucucaagaGACCCUgacGGCCACCUGCUgGUu -3'
miRNA:   3'- -CUGUC-------------UUGGGA---CCGGUGGACGAgCAu -5'
29018 5' -57.6 NC_006146.1 + 58687 0.68 0.75438
Target:  5'- gGAC-GAGCCCUGGUCggacugguACCUGUUUGa- -3'
miRNA:   3'- -CUGuCUUGGGACCGG--------UGGACGAGCau -5'
29018 5' -57.6 NC_006146.1 + 59899 0.69 0.675111
Target:  5'- -cCAGcACgCUGGCCaACCUGCUgGUGc -3'
miRNA:   3'- cuGUCuUGgGACCGG-UGGACGAgCAU- -5'
29018 5' -57.6 NC_006146.1 + 61182 0.66 0.835133
Target:  5'- -uCAG-GCCCUGGCUcCUUGCUCa-- -3'
miRNA:   3'- cuGUCuUGGGACCGGuGGACGAGcau -5'
29018 5' -57.6 NC_006146.1 + 61970 0.67 0.80958
Target:  5'- cACGGGggccguugagGCCCacGUCACCUGCUCGg- -3'
miRNA:   3'- cUGUCU----------UGGGacCGGUGGACGAGCau -5'
29018 5' -57.6 NC_006146.1 + 62829 0.72 0.484857
Target:  5'- aAUGGAACCCUGGCCGCCgugGC-Ca-- -3'
miRNA:   3'- cUGUCUUGGGACCGGUGGa--CGaGcau -5'
29018 5' -57.6 NC_006146.1 + 64730 0.67 0.773306
Target:  5'- uGCAGAGCCCugcguucuggaUGGCCugCaUGCgagCGUc -3'
miRNA:   3'- cUGUCUUGGG-----------ACCGGugG-ACGa--GCAu -5'
29018 5' -57.6 NC_006146.1 + 83723 0.71 0.573292
Target:  5'- -gUAGGACCCUGGCCAaaaacaacccCCUGUgggcCGUGa -3'
miRNA:   3'- cuGUCUUGGGACCGGU----------GGACGa---GCAU- -5'
29018 5' -57.6 NC_006146.1 + 102137 0.66 0.850474
Target:  5'- uGACAGAGCgcaccgccugaagCUUGGCCACCUGggcCUCc-- -3'
miRNA:   3'- -CUGUCUUG-------------GGACCGGUGGAC---GAGcau -5'
29018 5' -57.6 NC_006146.1 + 103112 0.66 0.835133
Target:  5'- gGGCAGAG-CCUGGCCGCCgucaCGUc -3'
miRNA:   3'- -CUGUCUUgGGACCGGUGGacgaGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.