Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29018 | 5' | -57.6 | NC_006146.1 | + | 123237 | 0.7 | 0.624131 |
Target: 5'- cACGaGACCCUGGCCGCCgcGCUgGg- -3' miRNA: 3'- cUGUcUUGGGACCGGUGGa-CGAgCau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 10209 | 0.68 | 0.753421 |
Target: 5'- aGACGGAccugccucuaccgGCCCUGGUCAUgUGC-CGg- -3' miRNA: 3'- -CUGUCU-------------UGGGACCGGUGgACGaGCau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 109419 | 0.68 | 0.735023 |
Target: 5'- -uCGGAGCCCUGGUgAuCCUGCcacUCGg- -3' miRNA: 3'- cuGUCUUGGGACCGgU-GGACG---AGCau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 115204 | 0.68 | 0.715311 |
Target: 5'- gGGCAGAGCCCcccggcGGCgGCCgUGCcCGUGc -3' miRNA: 3'- -CUGUCUUGGGa-----CCGgUGG-ACGaGCAU- -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 51367 | 0.69 | 0.695317 |
Target: 5'- gGGCGGGAUCUUGGUCACCcGCUUc-- -3' miRNA: 3'- -CUGUCUUGGGACCGGUGGaCGAGcau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 114781 | 0.69 | 0.675111 |
Target: 5'- -uCGGGGCCCgcGGCCACCUucGCcuUCGUGg -3' miRNA: 3'- cuGUCUUGGGa-CCGGUGGA--CG--AGCAU- -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 131754 | 0.69 | 0.664951 |
Target: 5'- uGGgAGGACCC-GGCCACCaUGCuaUCGUu -3' miRNA: 3'- -CUgUCUUGGGaCCGGUGG-ACG--AGCAu -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 122421 | 0.69 | 0.644561 |
Target: 5'- cACGcGGAUCCUGGCCGCCaUGCuaUCGg- -3' miRNA: 3'- cUGU-CUUGGGACCGGUGG-ACG--AGCau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 40365 | 0.7 | 0.634347 |
Target: 5'- cGGCGGAGaaggccCCCUGGUCGCCgcccgGCgCGUAg -3' miRNA: 3'- -CUGUCUU------GGGACCGGUGGa----CGaGCAU- -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 20230 | 0.68 | 0.754379 |
Target: 5'- uGCAGGauucgGCCCUGGUCAuggaUCUGCUCa-- -3' miRNA: 3'- cUGUCU-----UGGGACCGGU----GGACGAGcau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 115376 | 0.67 | 0.762953 |
Target: 5'- cGGCGGAgcuggagGCCCUGGCCGCUcGCgugCa-- -3' miRNA: 3'- -CUGUCU-------UGGGACCGGUGGaCGa--Gcau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 124158 | 0.67 | 0.763901 |
Target: 5'- aGGCgAGGACCCUGGCCagcguggccuccGCCcGcCUCGg- -3' miRNA: 3'- -CUG-UCUUGGGACCGG------------UGGaC-GAGCau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 102137 | 0.66 | 0.850474 |
Target: 5'- uGACAGAGCgcaccgccugaagCUUGGCCACCUGggcCUCc-- -3' miRNA: 3'- -CUGUCUUG-------------GGACCGGUGGAC---GAGcau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 10569 | 0.66 | 0.843293 |
Target: 5'- uGACAuGGACCgUGGCCAgCCUGagCGUc -3' miRNA: 3'- -CUGU-CUUGGgACCGGU-GGACgaGCAu -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 103112 | 0.66 | 0.835133 |
Target: 5'- gGGCAGAG-CCUGGCCGCCgucaCGUc -3' miRNA: 3'- -CUGUCUUgGGACCGGUGGacgaGCAu -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 131609 | 0.66 | 0.818269 |
Target: 5'- cACAGGcCUCUGcuGCCACCUGC-CGUc -3' miRNA: 3'- cUGUCUuGGGAC--CGGUGGACGaGCAu -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 168516 | 0.66 | 0.818269 |
Target: 5'- aACAGAGCCCUcuggaagcccgcGGaCGCCUgucccgGCUCGUAc -3' miRNA: 3'- cUGUCUUGGGA------------CCgGUGGA------CGAGCAU- -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 126877 | 0.67 | 0.782585 |
Target: 5'- aGCGGGGCCCUcGGCCGCCccCUCc-- -3' miRNA: 3'- cUGUCUUGGGA-CCGGUGGacGAGcau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 133019 | 0.67 | 0.773306 |
Target: 5'- aGGCAGGACUCUcccaGCCcgGCCUGCUCu-- -3' miRNA: 3'- -CUGUCUUGGGAc---CGG--UGGACGAGcau -5' |
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29018 | 5' | -57.6 | NC_006146.1 | + | 22819 | 0.67 | 0.773306 |
Target: 5'- gGGCGGGgucuuuGCCCUGGUgcuCCUGCUCa-- -3' miRNA: 3'- -CUGUCU------UGGGACCGgu-GGACGAGcau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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