miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29019 3' -66.2 NC_006146.1 + 102826 0.66 0.490099
Target:  5'- cGCGgggGCUCUgCGCUugcucgCGCCGCUCGu -3'
miRNA:   3'- aCGCa--CGGGGgGCGGua----GCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 167080 0.66 0.490099
Target:  5'- aGCGgggGUgCCCCGCC-UgGCCuGaCCCAg -3'
miRNA:   3'- aCGCa--CGgGGGGCGGuAgCGG-C-GGGU- -5'
29019 3' -66.2 NC_006146.1 + 147121 0.66 0.490099
Target:  5'- aGCGgGCCCCagaCGCgCAg-GCCGCCa- -3'
miRNA:   3'- aCGCaCGGGGg--GCG-GUagCGGCGGgu -5'
29019 3' -66.2 NC_006146.1 + 3002 0.66 0.489208
Target:  5'- cGCcgGUGCCCCCgCGaggguccCCGg-GCCGCCCc -3'
miRNA:   3'- aCG--CACGGGGG-GC-------GGUagCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 2070 0.66 0.489208
Target:  5'- cGCcgGUGCCCCCgCGaggguccCCGg-GCCGCCCc -3'
miRNA:   3'- aCG--CACGGGGG-GC-------GGUagCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 1138 0.66 0.489208
Target:  5'- cGCcgGUGCCCCCgCGaggguccCCGg-GCCGCCCc -3'
miRNA:   3'- aCG--CACGGGGG-GC-------GGUagCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 95408 0.66 0.481223
Target:  5'- cGCugGUGCucuugccggCCCCCGCCGUCcCCGUgaCCAc -3'
miRNA:   3'- aCG--CACG---------GGGGGCGGUAGcGGCG--GGU- -5'
29019 3' -66.2 NC_006146.1 + 166038 0.66 0.481223
Target:  5'- gUGCcuGUGgCCCCCGCCccUGCC-CCUAu -3'
miRNA:   3'- -ACG--CACgGGGGGCGGuaGCGGcGGGU- -5'
29019 3' -66.2 NC_006146.1 + 56593 0.66 0.481223
Target:  5'- gGCGccgaGCCCgCCGCCGgucuccUCGCCggcGUCCAu -3'
miRNA:   3'- aCGCa---CGGGgGGCGGU------AGCGG---CGGGU- -5'
29019 3' -66.2 NC_006146.1 + 93078 0.66 0.481223
Target:  5'- cGCc-GCCCCCCuccGCCGUC-CUGuCCCAa -3'
miRNA:   3'- aCGcaCGGGGGG---CGGUAGcGGC-GGGU- -5'
29019 3' -66.2 NC_006146.1 + 69208 0.66 0.481223
Target:  5'- cUGCucucucCCCCCCuCUAgCGCCGCCCGu -3'
miRNA:   3'- -ACGcac---GGGGGGcGGUaGCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 160368 0.66 0.481223
Target:  5'- gGCGUcucaGCgCCCuuGgCAg-GCCGCCCAg -3'
miRNA:   3'- aCGCA----CG-GGGggCgGUagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 102780 0.66 0.481223
Target:  5'- gGCGUggcGCCgCuCCCGCgGaccggcUgGCCGCCCAc -3'
miRNA:   3'- aCGCA---CGG-G-GGGCGgU------AgCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 115891 0.66 0.481223
Target:  5'- ----cGCCCgCCC-CCAUC-CCGCCCGg -3'
miRNA:   3'- acgcaCGGG-GGGcGGUAGcGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 43806 0.66 0.481223
Target:  5'- gGCGUGCCUguCCCaCCG-CuCCGCCCu -3'
miRNA:   3'- aCGCACGGG--GGGcGGUaGcGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 84446 0.66 0.472426
Target:  5'- gGC-UGCCCCCUcaaaGCCca-GCUGCCCc -3'
miRNA:   3'- aCGcACGGGGGG----CGGuagCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 33159 0.66 0.472426
Target:  5'- gGgGUGgCCCggcugggcaCCGCCG-CGCCGCCg- -3'
miRNA:   3'- aCgCACgGGG---------GGCGGUaGCGGCGGgu -5'
29019 3' -66.2 NC_006146.1 + 44442 0.66 0.472426
Target:  5'- cGCGcGCUUaCCUGCCGccuuucUCGCCGCCgGg -3'
miRNA:   3'- aCGCaCGGG-GGGCGGU------AGCGGCGGgU- -5'
29019 3' -66.2 NC_006146.1 + 118199 0.66 0.472426
Target:  5'- gGCc-GCCCCCUGaCC-UC-CCGCCCGg -3'
miRNA:   3'- aCGcaCGGGGGGC-GGuAGcGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 106339 0.66 0.463711
Target:  5'- aGCuG-GCCCCCUGCU-UC-CUGCCCAa -3'
miRNA:   3'- aCG-CaCGGGGGGCGGuAGcGGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.