miRNA display CGI


Results 1 - 20 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29019 3' -66.2 NC_006146.1 + 55948 1.07 0.000535
Target:  5'- cUGCGUGCCCCCCGCCAUCGCCGCCCAg -3'
miRNA:   3'- -ACGCACGGGGGGCGGUAGCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 40366 0.76 0.103686
Target:  5'- gGCGgagaagGCCCCCUG--GUCGCCGCCCGg -3'
miRNA:   3'- aCGCa-----CGGGGGGCggUAGCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 52914 0.76 0.111596
Target:  5'- cUGCGUgGCCCCCCGggggcgcuggccUCGUcCGCCGCCUAu -3'
miRNA:   3'- -ACGCA-CGGGGGGC------------GGUA-GCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 129825 0.75 0.120069
Target:  5'- cGCG-GCCCaCCCGCCA-CGCC-CCCGu -3'
miRNA:   3'- aCGCaCGGG-GGGCGGUaGCGGcGGGU- -5'
29019 3' -66.2 NC_006146.1 + 75742 0.74 0.145665
Target:  5'- -cCGUGCUCUCCGaCAUCGCCGCCgAg -3'
miRNA:   3'- acGCACGGGGGGCgGUAGCGGCGGgU- -5'
29019 3' -66.2 NC_006146.1 + 26182 0.74 0.145665
Target:  5'- gGUGUGCcagcguCCCCCGCa---GCCGCCCAg -3'
miRNA:   3'- aCGCACG------GGGGGCGguagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 29260 0.74 0.145665
Target:  5'- gGUGUGCcagcguCCCCCGCa---GCCGCCCAg -3'
miRNA:   3'- aCGCACG------GGGGGCGguagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 20026 0.74 0.145665
Target:  5'- gGUGUGCcagcguCCCCCGCa---GCCGCCCAg -3'
miRNA:   3'- aCGCACG------GGGGGCGguagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 160596 0.74 0.145665
Target:  5'- gUGCGUGCuugCCCCCGagGUCgGCCGCCUg -3'
miRNA:   3'- -ACGCACG---GGGGGCggUAG-CGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 23104 0.74 0.145665
Target:  5'- gGUGUGCcagcguCCCCCGCa---GCCGCCCAg -3'
miRNA:   3'- aCGCACG------GGGGGCGguagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 13871 0.74 0.145665
Target:  5'- gGUGUGCcagcguCCCCCGCa---GCCGCCCAg -3'
miRNA:   3'- aCGCACG------GGGGGCGguagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 130426 0.73 0.167636
Target:  5'- cGCGgccccucUGCCCCCCuucacccaccagGCCAUUGCCGCaCCc -3'
miRNA:   3'- aCGC-------ACGGGGGG------------CGGUAGCGGCG-GGu -5'
29019 3' -66.2 NC_006146.1 + 2563 0.72 0.207348
Target:  5'- cGCGcUGgCCCCCGCCAggccccggCcCCGCCCu -3'
miRNA:   3'- aCGC-ACgGGGGGCGGUa-------GcGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 119072 0.72 0.207348
Target:  5'- -cCGaGCCCCCCuCCA-CGCCGCCCc -3'
miRNA:   3'- acGCaCGGGGGGcGGUaGCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 3495 0.72 0.207348
Target:  5'- cGCGcUGgCCCCCGCCAggccccggCcCCGCCCu -3'
miRNA:   3'- aCGC-ACgGGGGGCGGUa-------GcGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 700 0.72 0.207348
Target:  5'- cGCGcUGgCCCCCGCCAggccccggCcCCGCCCu -3'
miRNA:   3'- aCGC-ACgGGGGGCGGUa-------GcGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 1631 0.72 0.207348
Target:  5'- cGCGcUGgCCCCCGCCAggccccggCcCCGCCCu -3'
miRNA:   3'- aCGC-ACgGGGGGCGGUa-------GcGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 130824 0.71 0.222124
Target:  5'- cGCGcugcagGCCCUCCGCCGggagaCGCUGUCCu -3'
miRNA:   3'- aCGCa-----CGGGGGGCGGUa----GCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 124175 0.71 0.222124
Target:  5'- aGCGUGgCCUCCGCCcgCcucggaGCCGCCgCGg -3'
miRNA:   3'- aCGCACgGGGGGCGGuaG------CGGCGG-GU- -5'
29019 3' -66.2 NC_006146.1 + 3542 0.71 0.232466
Target:  5'- ----aGCCCCCgGCCggCGCCGCCg- -3'
miRNA:   3'- acgcaCGGGGGgCGGuaGCGGCGGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.