miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29019 3' -66.2 NC_006146.1 + 1678 0.71 0.232466
Target:  5'- ----aGCCCCCgGCCggCGCCGCCg- -3'
miRNA:   3'- acgcaCGGGGGgCGGuaGCGGCGGgu -5'
29019 3' -66.2 NC_006146.1 + 2610 0.71 0.232466
Target:  5'- ----aGCCCCCgGCCggCGCCGCCg- -3'
miRNA:   3'- acgcaCGGGGGgCGGuaGCGGCGGgu -5'
29019 3' -66.2 NC_006146.1 + 3542 0.71 0.232466
Target:  5'- ----aGCCCCCgGCCggCGCCGCCg- -3'
miRNA:   3'- acgcaCGGGGGgCGGuaGCGGCGGgu -5'
29019 3' -66.2 NC_006146.1 + 47534 0.71 0.232466
Target:  5'- uUGCGggGCCCCCgGCCAgCGCCagaGCUCc -3'
miRNA:   3'- -ACGCa-CGGGGGgCGGUaGCGG---CGGGu -5'
29019 3' -66.2 NC_006146.1 + 156487 0.71 0.248736
Target:  5'- -cUGUGCCCCCCGUaaaacucuacggCGUaCGCgGCCCGg -3'
miRNA:   3'- acGCACGGGGGGCG------------GUA-GCGgCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 117099 0.71 0.248736
Target:  5'- ----aGCCCCCCGCUAUggaCGCCGCgCGg -3'
miRNA:   3'- acgcaCGGGGGGCGGUA---GCGGCGgGU- -5'
29019 3' -66.2 NC_006146.1 + 126368 0.71 0.248736
Target:  5'- cGCa-GCCCCCCaCCGUCcuCCGCCCGu -3'
miRNA:   3'- aCGcaCGGGGGGcGGUAGc-GGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 51089 0.7 0.254365
Target:  5'- gGcCG-GUCCCCCGCCuugCGCUGCCgGa -3'
miRNA:   3'- aC-GCaCGGGGGGCGGua-GCGGCGGgU- -5'
29019 3' -66.2 NC_006146.1 + 117141 0.7 0.265936
Target:  5'- gGCGaGaCCUCCGCC--CGCCGCCCGu -3'
miRNA:   3'- aCGCaCgGGGGGCGGuaGCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 20352 0.7 0.265936
Target:  5'- cGCGUGUUCuCCUGCCuccuggcCGCgGCCCAg -3'
miRNA:   3'- aCGCACGGG-GGGCGGua-----GCGgCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 138004 0.7 0.267708
Target:  5'- gGgGUGCgCCCCCagccggacccugguGCCAggcagggaccucgCGCCGCCCGc -3'
miRNA:   3'- aCgCACG-GGGGG--------------CGGUa------------GCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 34174 0.7 0.267708
Target:  5'- gGgGUGCgCCCCCagccggacccugguGCCAggcagggaccucgCGCCGCCCGc -3'
miRNA:   3'- aCgCACG-GGGGG--------------CGGUa------------GCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 116086 0.7 0.270085
Target:  5'- gGCccGCCCUCCGCCGgguccucuccaacgaGCUGCCCAa -3'
miRNA:   3'- aCGcaCGGGGGGCGGUag-------------CGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 127248 0.7 0.277929
Target:  5'- aUGCGagccggGCCCCUCuccccaggcgGCCAcgcccCGCCGCCCAc -3'
miRNA:   3'- -ACGCa-----CGGGGGG----------CGGUa----GCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 16949 0.7 0.277929
Target:  5'- gGUGUGCCagcguCCCC-CCA--GCCGCCCAg -3'
miRNA:   3'- aCGCACGG-----GGGGcGGUagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 15329 0.69 0.303201
Target:  5'- gGUGUGCCCCUgGCgGgCGCCccgcgcgaGCCCGg -3'
miRNA:   3'- aCGCACGGGGGgCGgUaGCGG--------CGGGU- -5'
29019 3' -66.2 NC_006146.1 + 14951 0.69 0.303201
Target:  5'- cUGCGcccgggGCCaccuCCCCGUCAUCGCCgGCuCCGc -3'
miRNA:   3'- -ACGCa-----CGG----GGGGCGGUAGCGG-CG-GGU- -5'
29019 3' -66.2 NC_006146.1 + 143540 0.69 0.309789
Target:  5'- cUGCuGUccagacGCCCCCCgGCC-UUGCCGCgCCAc -3'
miRNA:   3'- -ACG-CA------CGGGGGG-CGGuAGCGGCG-GGU- -5'
29019 3' -66.2 NC_006146.1 + 115142 0.69 0.309789
Target:  5'- cGC-UGCCCCUgGCC--CGCCGCCgGg -3'
miRNA:   3'- aCGcACGGGGGgCGGuaGCGGCGGgU- -5'
29019 3' -66.2 NC_006146.1 + 48250 0.69 0.309789
Target:  5'- cGCGgagGgCCCCCGCC---GCCGUCCu -3'
miRNA:   3'- aCGCa--CgGGGGGCGGuagCGGCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.