miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29019 3' -66.2 NC_006146.1 + 568 0.66 0.463711
Target:  5'- cGUG-GCCUCCCaggagagggGCCGggggCGCgGCCCGg -3'
miRNA:   3'- aCGCaCGGGGGG---------CGGUa---GCGgCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 2431 0.66 0.463711
Target:  5'- cGUG-GCCUCCCaggagagggGCCGggggCGCgGCCCGg -3'
miRNA:   3'- aCGCaCGGGGGG---------CGGUa---GCGgCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 106339 0.66 0.463711
Target:  5'- aGCuG-GCCCCCUGCU-UC-CUGCCCAa -3'
miRNA:   3'- aCG-CaCGGGGGGCGGuAGcGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 3363 0.66 0.463711
Target:  5'- cGUG-GCCUCCCaggagagggGCCGggggCGCgGCCCGg -3'
miRNA:   3'- aCGCaCGGGGGG---------CGGUa---GCGgCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 10759 0.66 0.463711
Target:  5'- gGCcuuaaagGCCagCCUGCCAaagucCGCCGCCCAu -3'
miRNA:   3'- aCGca-----CGGg-GGGCGGUa----GCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 116570 0.66 0.45508
Target:  5'- cGCGUGCCCCUCauccacguagggGCCAaggUGCaGCCUg -3'
miRNA:   3'- aCGCACGGGGGG------------CGGUa--GCGgCGGGu -5'
29019 3' -66.2 NC_006146.1 + 1350 0.66 0.45508
Target:  5'- cGgGgaaGCCCCCCGCUcgccccucggGUCGCgggacaCGCCCc -3'
miRNA:   3'- aCgCa--CGGGGGGCGG----------UAGCG------GCGGGu -5'
29019 3' -66.2 NC_006146.1 + 42081 0.66 0.45508
Target:  5'- aGgGUGaCCCCCuCUGcCGCCGCCCc -3'
miRNA:   3'- aCgCACgGGGGGcGGUaGCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 3214 0.66 0.45508
Target:  5'- cGgGgaaGCCCCCCGCUcgccccucggGUCGCgggacaCGCCCc -3'
miRNA:   3'- aCgCa--CGGGGGGCGG----------UAGCG------GCGGGu -5'
29019 3' -66.2 NC_006146.1 + 419 0.66 0.45508
Target:  5'- cGgGgaaGCCCCCCGCUcgccccucggGUCGCgggacaCGCCCc -3'
miRNA:   3'- aCgCa--CGGGGGGCGG----------UAGCG------GCGGGu -5'
29019 3' -66.2 NC_006146.1 + 19501 0.66 0.45508
Target:  5'- aGC-UGCCgCCgCGCCAUCccCCGCCUg -3'
miRNA:   3'- aCGcACGGgGG-GCGGUAGc-GGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 2282 0.66 0.45508
Target:  5'- cGgGgaaGCCCCCCGCUcgccccucggGUCGCgggacaCGCCCc -3'
miRNA:   3'- aCgCa--CGGGGGGCGG----------UAGCG------GCGGGu -5'
29019 3' -66.2 NC_006146.1 + 52628 0.66 0.446537
Target:  5'- -uCGUGCCCCCUGagGaUGCCGCUCu -3'
miRNA:   3'- acGCACGGGGGGCggUaGCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 126877 0.66 0.446537
Target:  5'- aGCGggGCCCUCgGCCGcccccucccCGCCGCgCAa -3'
miRNA:   3'- aCGCa-CGGGGGgCGGUa--------GCGGCGgGU- -5'
29019 3' -66.2 NC_006146.1 + 121364 0.67 0.438084
Target:  5'- gGCGUGgCCUCCGCCcccagaggaGCC-CCCGg -3'
miRNA:   3'- aCGCACgGGGGGCGGuag------CGGcGGGU- -5'
29019 3' -66.2 NC_006146.1 + 156880 0.67 0.438084
Target:  5'- cGCcUGCUCCCUGCCcucCGCCuuccagcaccaGCCCGg -3'
miRNA:   3'- aCGcACGGGGGGCGGua-GCGG-----------CGGGU- -5'
29019 3' -66.2 NC_006146.1 + 115201 0.67 0.429724
Target:  5'- gGCGggcagaGCCCCCCGgCGgcgGCCguGCCCGu -3'
miRNA:   3'- aCGCa-----CGGGGGGCgGUag-CGG--CGGGU- -5'
29019 3' -66.2 NC_006146.1 + 129301 0.67 0.429724
Target:  5'- aGCGgaccaGCCCCCCggGCC-UCuCCGCCUc -3'
miRNA:   3'- aCGCa----CGGGGGG--CGGuAGcGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 50116 0.67 0.429724
Target:  5'- cGCGgaccgGCgaCCUCCGCCAgggacaugaggCGCCGCCa- -3'
miRNA:   3'- aCGCa----CG--GGGGGCGGUa----------GCGGCGGgu -5'
29019 3' -66.2 NC_006146.1 + 3706 0.67 0.421458
Target:  5'- cGCGccGCCCCCCGggaccCCGggcgcgCGCCGgCCu -3'
miRNA:   3'- aCGCa-CGGGGGGC-----GGUa-----GCGGCgGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.