miRNA display CGI


Results 1 - 20 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29019 3' -66.2 NC_006146.1 + 419 0.66 0.45508
Target:  5'- cGgGgaaGCCCCCCGCUcgccccucggGUCGCgggacaCGCCCc -3'
miRNA:   3'- aCgCa--CGGGGGGCGG----------UAGCG------GCGGGu -5'
29019 3' -66.2 NC_006146.1 + 568 0.66 0.463711
Target:  5'- cGUG-GCCUCCCaggagagggGCCGggggCGCgGCCCGg -3'
miRNA:   3'- aCGCaCGGGGGG---------CGGUa---GCGgCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 700 0.72 0.207348
Target:  5'- cGCGcUGgCCCCCGCCAggccccggCcCCGCCCu -3'
miRNA:   3'- aCGC-ACgGGGGGCGGUa-------GcGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 747 0.71 0.232466
Target:  5'- ----aGCCCCCgGCCggCGCCGCCg- -3'
miRNA:   3'- acgcaCGGGGGgCGGuaGCGGCGGgu -5'
29019 3' -66.2 NC_006146.1 + 812 0.67 0.403616
Target:  5'- cUGCGgcgccgGCCCcuCCCGCCGgccauccccacgCGCgGCCCc -3'
miRNA:   3'- -ACGCa-----CGGG--GGGCGGUa-----------GCGgCGGGu -5'
29019 3' -66.2 NC_006146.1 + 910 0.67 0.421458
Target:  5'- cGCGccGCCCCCCGggaccCCGggcgcgCGCCGgCCu -3'
miRNA:   3'- aCGCa-CGGGGGGC-----GGUa-----GCGGCgGGu -5'
29019 3' -66.2 NC_006146.1 + 1138 0.66 0.489208
Target:  5'- cGCcgGUGCCCCCgCGaggguccCCGg-GCCGCCCc -3'
miRNA:   3'- aCG--CACGGGGG-GC-------GGUagCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 1350 0.66 0.45508
Target:  5'- cGgGgaaGCCCCCCGCUcgccccucggGUCGCgggacaCGCCCc -3'
miRNA:   3'- aCgCa--CGGGGGGCGG----------UAGCG------GCGGGu -5'
29019 3' -66.2 NC_006146.1 + 1499 0.66 0.463711
Target:  5'- cGUG-GCCUCCCaggagagggGCCGggggCGCgGCCCGg -3'
miRNA:   3'- aCGCaCGGGGGG---------CGGUa---GCGgCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 1631 0.72 0.207348
Target:  5'- cGCGcUGgCCCCCGCCAggccccggCcCCGCCCu -3'
miRNA:   3'- aCGC-ACgGGGGGCGGUa-------GcGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 1678 0.71 0.232466
Target:  5'- ----aGCCCCCgGCCggCGCCGCCg- -3'
miRNA:   3'- acgcaCGGGGGgCGGuaGCGGCGGgu -5'
29019 3' -66.2 NC_006146.1 + 1748 0.67 0.419816
Target:  5'- gGCGccgGCCCcuCCCGCCGgccauccccacgCGCgGCCCc -3'
miRNA:   3'- aCGCa--CGGG--GGGCGGUa-----------GCGgCGGGu -5'
29019 3' -66.2 NC_006146.1 + 1842 0.67 0.421458
Target:  5'- cGCGccGCCCCCCGggaccCCGggcgcgCGCCGgCCu -3'
miRNA:   3'- aCGCa-CGGGGGGC-----GGUa-----GCGGCgGGu -5'
29019 3' -66.2 NC_006146.1 + 2070 0.66 0.489208
Target:  5'- cGCcgGUGCCCCCgCGaggguccCCGg-GCCGCCCc -3'
miRNA:   3'- aCG--CACGGGGG-GC-------GGUagCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 2282 0.66 0.45508
Target:  5'- cGgGgaaGCCCCCCGCUcgccccucggGUCGCgggacaCGCCCc -3'
miRNA:   3'- aCgCa--CGGGGGGCGG----------UAGCG------GCGGGu -5'
29019 3' -66.2 NC_006146.1 + 2431 0.66 0.463711
Target:  5'- cGUG-GCCUCCCaggagagggGCCGggggCGCgGCCCGg -3'
miRNA:   3'- aCGCaCGGGGGG---------CGGUa---GCGgCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 2563 0.72 0.207348
Target:  5'- cGCGcUGgCCCCCGCCAggccccggCcCCGCCCu -3'
miRNA:   3'- aCGC-ACgGGGGGCGGUa-------GcGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 2610 0.71 0.232466
Target:  5'- ----aGCCCCCgGCCggCGCCGCCg- -3'
miRNA:   3'- acgcaCGGGGGgCGGuaGCGGCGGgu -5'
29019 3' -66.2 NC_006146.1 + 2680 0.67 0.419816
Target:  5'- gGCGccgGCCCcuCCCGCCGgccauccccacgCGCgGCCCc -3'
miRNA:   3'- aCGCa--CGGG--GGGCGGUa-----------GCGgCGGGu -5'
29019 3' -66.2 NC_006146.1 + 2774 0.67 0.421458
Target:  5'- cGCGccGCCCCCCGggaccCCGggcgcgCGCCGgCCu -3'
miRNA:   3'- aCGCa-CGGGGGGC-----GGUa-----GCGGCgGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.