miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29019 3' -66.2 NC_006146.1 + 55948 1.07 0.000535
Target:  5'- cUGCGUGCCCCCCGCCAUCGCCGCCCAg -3'
miRNA:   3'- -ACGCACGGGGGGCGGUAGCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 48250 0.69 0.309789
Target:  5'- cGCGgagGgCCCCCGCC---GCCGUCCu -3'
miRNA:   3'- aCGCa--CgGGGGGCGGuagCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 155836 0.69 0.309789
Target:  5'- aGCGgagCCCCCGCCAgugccuccUCGCagGCCCGg -3'
miRNA:   3'- aCGCacgGGGGGCGGU--------AGCGg-CGGGU- -5'
29019 3' -66.2 NC_006146.1 + 147121 0.66 0.490099
Target:  5'- aGCGgGCCCCagaCGCgCAg-GCCGCCa- -3'
miRNA:   3'- aCGCaCGGGGg--GCG-GUagCGGCGGgu -5'
29019 3' -66.2 NC_006146.1 + 23104 0.74 0.145665
Target:  5'- gGUGUGCcagcguCCCCCGCa---GCCGCCCAg -3'
miRNA:   3'- aCGCACG------GGGGGCGguagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 26182 0.74 0.145665
Target:  5'- gGUGUGCcagcguCCCCCGCa---GCCGCCCAg -3'
miRNA:   3'- aCGCACG------GGGGGCGguagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 160596 0.74 0.145665
Target:  5'- gUGCGUGCuugCCCCCGagGUCgGCCGCCUg -3'
miRNA:   3'- -ACGCACG---GGGGGCggUAG-CGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 130426 0.73 0.167636
Target:  5'- cGCGgccccucUGCCCCCCuucacccaccagGCCAUUGCCGCaCCc -3'
miRNA:   3'- aCGC-------ACGGGGGG------------CGGUAGCGGCG-GGu -5'
29019 3' -66.2 NC_006146.1 + 156487 0.71 0.248736
Target:  5'- -cUGUGCCCCCCGUaaaacucuacggCGUaCGCgGCCCGg -3'
miRNA:   3'- acGCACGGGGGGCG------------GUA-GCGgCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 14951 0.69 0.303201
Target:  5'- cUGCGcccgggGCCaccuCCCCGUCAUCGCCgGCuCCGc -3'
miRNA:   3'- -ACGCa-----CGG----GGGGCGGUAGCGG-CG-GGU- -5'
29019 3' -66.2 NC_006146.1 + 138004 0.7 0.267708
Target:  5'- gGgGUGCgCCCCCagccggacccugguGCCAggcagggaccucgCGCCGCCCGc -3'
miRNA:   3'- aCgCACG-GGGGG--------------CGGUa------------GCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 47534 0.71 0.232466
Target:  5'- uUGCGggGCCCCCgGCCAgCGCCagaGCUCc -3'
miRNA:   3'- -ACGCa-CGGGGGgCGGUaGCGG---CGGGu -5'
29019 3' -66.2 NC_006146.1 + 52914 0.76 0.111596
Target:  5'- cUGCGUgGCCCCCCGggggcgcuggccUCGUcCGCCGCCUAu -3'
miRNA:   3'- -ACGCA-CGGGGGGC------------GGUA-GCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 16949 0.7 0.277929
Target:  5'- gGUGUGCCagcguCCCC-CCA--GCCGCCCAg -3'
miRNA:   3'- aCGCACGG-----GGGGcGGUagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 13871 0.74 0.145665
Target:  5'- gGUGUGCcagcguCCCCCGCa---GCCGCCCAg -3'
miRNA:   3'- aCGCACG------GGGGGCGguagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 130824 0.71 0.222124
Target:  5'- cGCGcugcagGCCCUCCGCCGggagaCGCUGUCCu -3'
miRNA:   3'- aCGCa-----CGGGGGGCGGUa----GCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 127248 0.7 0.277929
Target:  5'- aUGCGagccggGCCCCUCuccccaggcgGCCAcgcccCGCCGCCCAc -3'
miRNA:   3'- -ACGCa-----CGGGGGG----------CGGUa----GCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 143540 0.69 0.309789
Target:  5'- cUGCuGUccagacGCCCCCCgGCC-UUGCCGCgCCAc -3'
miRNA:   3'- -ACG-CA------CGGGGGG-CGGuAGCGGCG-GGU- -5'
29019 3' -66.2 NC_006146.1 + 20026 0.74 0.145665
Target:  5'- gGUGUGCcagcguCCCCCGCa---GCCGCCCAg -3'
miRNA:   3'- aCGCACG------GGGGGCGguagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 29260 0.74 0.145665
Target:  5'- gGUGUGCcagcguCCCCCGCa---GCCGCCCAg -3'
miRNA:   3'- aCGCACG------GGGGGCGguagCGGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.