miRNA display CGI


Results 21 - 40 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29019 3' -66.2 NC_006146.1 + 102936 0.68 0.344356
Target:  5'- cUGCGUcagcagguagucGCCCUCCGagGgcaGCCGCCCAu -3'
miRNA:   3'- -ACGCA------------CGGGGGGCggUag-CGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 155836 0.69 0.309789
Target:  5'- aGCGgagCCCCCGCCAgugccuccUCGCagGCCCGg -3'
miRNA:   3'- aCGCacgGGGGGCGGU--------AGCGg-CGGGU- -5'
29019 3' -66.2 NC_006146.1 + 47534 0.71 0.232466
Target:  5'- uUGCGggGCCCCCgGCCAgCGCCagaGCUCc -3'
miRNA:   3'- -ACGCa-CGGGGGgCGGUaGCGG---CGGGu -5'
29019 3' -66.2 NC_006146.1 + 20026 0.74 0.145665
Target:  5'- gGUGUGCcagcguCCCCCGCa---GCCGCCCAg -3'
miRNA:   3'- aCGCACG------GGGGGCGguagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 66450 0.67 0.413289
Target:  5'- cGCa-GCUgCCUGCCGagggCGCCGCCCc -3'
miRNA:   3'- aCGcaCGGgGGGCGGUa---GCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 165256 0.68 0.366391
Target:  5'- gGUGcucgucccccUGUCCCCCGCCAUgGCCauGUCCc -3'
miRNA:   3'- aCGC----------ACGGGGGGCGGUAgCGG--CGGGu -5'
29019 3' -66.2 NC_006146.1 + 48250 0.69 0.309789
Target:  5'- cGCGgagGgCCCCCGCC---GCCGUCCu -3'
miRNA:   3'- aCGCa--CgGGGGGCGGuagCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 13871 0.74 0.145665
Target:  5'- gGUGUGCcagcguCCCCCGCa---GCCGCCCAg -3'
miRNA:   3'- aCGCACG------GGGGGCGguagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 31542 0.68 0.366391
Target:  5'- aGCaG-GCaCCCCCcCCggCGCCGCCCc -3'
miRNA:   3'- aCG-CaCG-GGGGGcGGuaGCGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 52914 0.76 0.111596
Target:  5'- cUGCGUgGCCCCCCGggggcgcuggccUCGUcCGCCGCCUAu -3'
miRNA:   3'- -ACGCA-CGGGGGGC------------GGUA-GCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 143540 0.69 0.309789
Target:  5'- cUGCuGUccagacGCCCCCCgGCC-UUGCCGCgCCAc -3'
miRNA:   3'- -ACG-CA------CGGGGGG-CGGuAGCGGCG-GGU- -5'
29019 3' -66.2 NC_006146.1 + 128020 0.68 0.351594
Target:  5'- gGaCGUGCCCCCCu---UCGCCuCCCAc -3'
miRNA:   3'- aC-GCACGGGGGGcgguAGCGGcGGGU- -5'
29019 3' -66.2 NC_006146.1 + 16949 0.7 0.277929
Target:  5'- gGUGUGCCagcguCCCC-CCA--GCCGCCCAg -3'
miRNA:   3'- aCGCACGG-----GGGGcGGUagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 156487 0.71 0.248736
Target:  5'- -cUGUGCCCCCCGUaaaacucuacggCGUaCGCgGCCCGg -3'
miRNA:   3'- acGCACGGGGGGCG------------GUA-GCGgCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 160596 0.74 0.145665
Target:  5'- gUGCGUGCuugCCCCCGagGUCgGCCGCCUg -3'
miRNA:   3'- -ACGCACG---GGGGGCggUAG-CGGCGGGu -5'
29019 3' -66.2 NC_006146.1 + 23104 0.74 0.145665
Target:  5'- gGUGUGCcagcguCCCCCGCa---GCCGCCCAg -3'
miRNA:   3'- aCGCACG------GGGGGCGguagCGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 50116 0.67 0.429724
Target:  5'- cGCGgaccgGCgaCCUCCGCCAgggacaugaggCGCCGCCa- -3'
miRNA:   3'- aCGCa----CG--GGGGGCGGUa----------GCGGCGGgu -5'
29019 3' -66.2 NC_006146.1 + 155754 0.67 0.418997
Target:  5'- gGCGUcGCCcgaggagcuguagaCCCCGCCGcagaagaGCCGCUCGg -3'
miRNA:   3'- aCGCA-CGG--------------GGGGCGGUag-----CGGCGGGU- -5'
29019 3' -66.2 NC_006146.1 + 55526 0.67 0.386259
Target:  5'- aGCGgccagggccuccaGCUCCgCCGCCA-CGCCGgCCAg -3'
miRNA:   3'- aCGCa------------CGGGG-GGCGGUaGCGGCgGGU- -5'
29019 3' -66.2 NC_006146.1 + 43414 0.68 0.373948
Target:  5'- cUGCGa--CCCCCGCCGUCuccUCGUCCAu -3'
miRNA:   3'- -ACGCacgGGGGGCGGUAGc--GGCGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.