miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29019 5' -55.2 NC_006146.1 + 101870 0.66 0.942859
Target:  5'- -gUGG-CggGGCGaGGACGGUGGCgGg -3'
miRNA:   3'- caACCaGagCCGCaUCUGCCACUGgU- -5'
29019 5' -55.2 NC_006146.1 + 94551 0.66 0.942859
Target:  5'- --cGGUCUugagggUGGCGUGGAgGGUGGu-- -3'
miRNA:   3'- caaCCAGA------GCCGCAUCUgCCACUggu -5'
29019 5' -55.2 NC_006146.1 + 167846 0.66 0.937736
Target:  5'- -cUGGgccaacgcgcUCUCGGCGUAGgggcacggagguGCGGUGAgguugcuCCAg -3'
miRNA:   3'- caACC----------AGAGCCGCAUC------------UGCCACU-------GGU- -5'
29019 5' -55.2 NC_006146.1 + 156232 0.67 0.92286
Target:  5'- --cGGgccccCUCGGcCGUGGACGGgguGCCGu -3'
miRNA:   3'- caaCCa----GAGCC-GCAUCUGCCac-UGGU- -5'
29019 5' -55.2 NC_006146.1 + 123411 0.67 0.92286
Target:  5'- --cGGcCUUGGgGUAgccGACGGUGAgCAg -3'
miRNA:   3'- caaCCaGAGCCgCAU---CUGCCACUgGU- -5'
29019 5' -55.2 NC_006146.1 + 75174 0.67 0.910845
Target:  5'- --gGGUUacguaggUUGGCGUAGAUGGUcuGGCCc -3'
miRNA:   3'- caaCCAG-------AGCCGCAUCUGCCA--CUGGu -5'
29019 5' -55.2 NC_006146.1 + 101914 0.67 0.905379
Target:  5'- --gGGUUUagaaaugcgcCGGUGgccgcggGGGCGGUGACCGa -3'
miRNA:   3'- caaCCAGA----------GCCGCa------UCUGCCACUGGU- -5'
29019 5' -55.2 NC_006146.1 + 150062 0.67 0.899086
Target:  5'- --cGGUCUCGGCGauggagAGGCaGGggaagaggccguUGGCCAc -3'
miRNA:   3'- caaCCAGAGCCGCa-----UCUG-CC------------ACUGGU- -5'
29019 5' -55.2 NC_006146.1 + 157542 0.68 0.892562
Target:  5'- -gUGGUCgCGGUGaGGGaggaGGUGGCCu -3'
miRNA:   3'- caACCAGaGCCGCaUCUg---CCACUGGu -5'
29019 5' -55.2 NC_006146.1 + 154125 0.68 0.878841
Target:  5'- uGUUGGaCUUGGCcaucauGuCGGUGACCAc -3'
miRNA:   3'- -CAACCaGAGCCGcau---CuGCCACUGGU- -5'
29019 5' -55.2 NC_006146.1 + 110296 0.69 0.815709
Target:  5'- -aUGGcCUCGGCGUAGGCGuucaucGCCGc -3'
miRNA:   3'- caACCaGAGCCGCAUCUGCcac---UGGU- -5'
29019 5' -55.2 NC_006146.1 + 64435 0.7 0.769726
Target:  5'- --gGGUCUCGGCGccgAGACagccuugGGUGGCg- -3'
miRNA:   3'- caaCCAGAGCCGCa--UCUG-------CCACUGgu -5'
29019 5' -55.2 NC_006146.1 + 41063 0.71 0.751726
Target:  5'- uGggGGcCUCGGgGUGGAgGGaGGCCAg -3'
miRNA:   3'- -CaaCCaGAGCCgCAUCUgCCaCUGGU- -5'
29019 5' -55.2 NC_006146.1 + 77954 0.73 0.652234
Target:  5'- uUUGGUCUgGGCcggAGcCGGUGGCCu -3'
miRNA:   3'- cAACCAGAgCCGca-UCuGCCACUGGu -5'
29019 5' -55.2 NC_006146.1 + 124511 0.73 0.611505
Target:  5'- -cUGGUCUCGGCccuggcgagGGACGGgGGCCu -3'
miRNA:   3'- caACCAGAGCCGca-------UCUGCCaCUGGu -5'
29019 5' -55.2 NC_006146.1 + 55983 1.08 0.004381
Target:  5'- gGUUGGUCUCGGCGUAGACGGUGACCAg -3'
miRNA:   3'- -CAACCAGAGCCGCAUCUGCCACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.