Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29019 | 5' | -55.2 | NC_006146.1 | + | 94551 | 0.66 | 0.942859 |
Target: 5'- --cGGUCUugagggUGGCGUGGAgGGUGGu-- -3' miRNA: 3'- caaCCAGA------GCCGCAUCUgCCACUggu -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 156232 | 0.67 | 0.92286 |
Target: 5'- --cGGgccccCUCGGcCGUGGACGGgguGCCGu -3' miRNA: 3'- caaCCa----GAGCC-GCAUCUGCCac-UGGU- -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 123411 | 0.67 | 0.92286 |
Target: 5'- --cGGcCUUGGgGUAgccGACGGUGAgCAg -3' miRNA: 3'- caaCCaGAGCCgCAU---CUGCCACUgGU- -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 150062 | 0.67 | 0.899086 |
Target: 5'- --cGGUCUCGGCGauggagAGGCaGGggaagaggccguUGGCCAc -3' miRNA: 3'- caaCCAGAGCCGCa-----UCUG-CC------------ACUGGU- -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 157542 | 0.68 | 0.892562 |
Target: 5'- -gUGGUCgCGGUGaGGGaggaGGUGGCCu -3' miRNA: 3'- caACCAGaGCCGCaUCUg---CCACUGGu -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 154125 | 0.68 | 0.878841 |
Target: 5'- uGUUGGaCUUGGCcaucauGuCGGUGACCAc -3' miRNA: 3'- -CAACCaGAGCCGcau---CuGCCACUGGU- -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 55983 | 1.08 | 0.004381 |
Target: 5'- gGUUGGUCUCGGCGUAGACGGUGACCAg -3' miRNA: 3'- -CAACCAGAGCCGCAUCUGCCACUGGU- -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 124511 | 0.73 | 0.611505 |
Target: 5'- -cUGGUCUCGGCccuggcgagGGACGGgGGCCu -3' miRNA: 3'- caACCAGAGCCGca-------UCUGCCaCUGGu -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 77954 | 0.73 | 0.652234 |
Target: 5'- uUUGGUCUgGGCcggAGcCGGUGGCCu -3' miRNA: 3'- cAACCAGAgCCGca-UCuGCCACUGGu -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 41063 | 0.71 | 0.751726 |
Target: 5'- uGggGGcCUCGGgGUGGAgGGaGGCCAg -3' miRNA: 3'- -CaaCCaGAGCCgCAUCUgCCaCUGGU- -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 64435 | 0.7 | 0.769726 |
Target: 5'- --gGGUCUCGGCGccgAGACagccuugGGUGGCg- -3' miRNA: 3'- caaCCAGAGCCGCa--UCUG-------CCACUGgu -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 110296 | 0.69 | 0.815709 |
Target: 5'- -aUGGcCUCGGCGUAGGCGuucaucGCCGc -3' miRNA: 3'- caACCaGAGCCGCAUCUGCcac---UGGU- -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 101914 | 0.67 | 0.905379 |
Target: 5'- --gGGUUUagaaaugcgcCGGUGgccgcggGGGCGGUGACCGa -3' miRNA: 3'- caaCCAGA----------GCCGCa------UCUGCCACUGGU- -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 75174 | 0.67 | 0.910845 |
Target: 5'- --gGGUUacguaggUUGGCGUAGAUGGUcuGGCCc -3' miRNA: 3'- caaCCAG-------AGCCGCAUCUGCCA--CUGGu -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 167846 | 0.66 | 0.937736 |
Target: 5'- -cUGGgccaacgcgcUCUCGGCGUAGgggcacggagguGCGGUGAgguugcuCCAg -3' miRNA: 3'- caACC----------AGAGCCGCAUC------------UGCCACU-------GGU- -5' |
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29019 | 5' | -55.2 | NC_006146.1 | + | 101870 | 0.66 | 0.942859 |
Target: 5'- -gUGG-CggGGCGaGGACGGUGGCgGg -3' miRNA: 3'- caACCaGagCCGCaUCUGCCACUGgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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