miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2902 3' -53.6 NC_001493.1 + 23919 0.66 0.963438
Target:  5'- aGAGUGUGcgGUUCUACGuGCCucgGAGCg -3'
miRNA:   3'- gCUCAUGCuaCGAGAUGCcCGG---CUUG- -5'
2902 3' -53.6 NC_001493.1 + 34308 0.66 0.963438
Target:  5'- uCGAGUACauGUGCUCgACGGucCCGAAa -3'
miRNA:   3'- -GCUCAUGc-UACGAGaUGCCc-GGCUUg -5'
2902 3' -53.6 NC_001493.1 + 130242 0.66 0.952093
Target:  5'- cCGAGUGCG--GCUCcg-GGGgCGGACg -3'
miRNA:   3'- -GCUCAUGCuaCGAGaugCCCgGCUUG- -5'
2902 3' -53.6 NC_001493.1 + 14688 0.66 0.952093
Target:  5'- cCGAGUGCG--GCUCcg-GGGgCGGACg -3'
miRNA:   3'- -GCUCAUGCuaCGAGaugCCCgGCUUG- -5'
2902 3' -53.6 NC_001493.1 + 23843 0.66 0.952093
Target:  5'- aGAGgcCGAgaaggcgGCUCUAUGGcUCGAACc -3'
miRNA:   3'- gCUCauGCUa------CGAGAUGCCcGGCUUG- -5'
2902 3' -53.6 NC_001493.1 + 51307 0.67 0.93361
Target:  5'- uGAGgacuUGGUGCUCUcACGGGagcuUGAGCa -3'
miRNA:   3'- gCUCau--GCUACGAGA-UGCCCg---GCUUG- -5'
2902 3' -53.6 NC_001493.1 + 111825 0.67 0.922884
Target:  5'- cCGGGgcUGGUGCUC-GCGGGuacgcCCGAAg -3'
miRNA:   3'- -GCUCauGCUACGAGaUGCCC-----GGCUUg -5'
2902 3' -53.6 NC_001493.1 + 32563 0.68 0.911163
Target:  5'- gGAG-ACGAagaaggGgUCU-CGGGCCGGACc -3'
miRNA:   3'- gCUCaUGCUa-----CgAGAuGCCCGGCUUG- -5'
2902 3' -53.6 NC_001493.1 + 36848 0.68 0.911163
Target:  5'- cCGAGUACGGgaUGCcau-CGGGCCGu-- -3'
miRNA:   3'- -GCUCAUGCU--ACGagauGCCCGGCuug -5'
2902 3' -53.6 NC_001493.1 + 13335 0.68 0.904932
Target:  5'- --cGUGCGGUGCUCgGCGGGacguguucgcgcCCGAc- -3'
miRNA:   3'- gcuCAUGCUACGAGaUGCCC------------GGCUug -5'
2902 3' -53.6 NC_001493.1 + 128889 0.68 0.904932
Target:  5'- --cGUGCGGUGCUCgGCGGGacguguucgcgcCCGAc- -3'
miRNA:   3'- gcuCAUGCUACGAGaUGCCC------------GGCUug -5'
2902 3' -53.6 NC_001493.1 + 42151 0.68 0.891741
Target:  5'- uCGAGUggucACGGUGuCUCU-CGGGgaUCGGACg -3'
miRNA:   3'- -GCUCA----UGCUAC-GAGAuGCCC--GGCUUG- -5'
2902 3' -53.6 NC_001493.1 + 87822 0.69 0.862548
Target:  5'- gCGGcGUACGAggagccgGCUCcACGGGCgGAGu -3'
miRNA:   3'- -GCU-CAUGCUa------CGAGaUGCCCGgCUUg -5'
2902 3' -53.6 NC_001493.1 + 14913 0.7 0.812422
Target:  5'- aGGGaGCGGUGCgggUGCGGGcCCGAGg -3'
miRNA:   3'- gCUCaUGCUACGag-AUGCCC-GGCUUg -5'
2902 3' -53.6 NC_001493.1 + 130467 0.7 0.812422
Target:  5'- aGGGaGCGGUGCgggUGCGGGcCCGAGg -3'
miRNA:   3'- gCUCaUGCUACGag-AUGCCC-GGCUUg -5'
2902 3' -53.6 NC_001493.1 + 57666 0.71 0.746359
Target:  5'- gGAGga-GAUGCUCggcgaggGCGGGCUGGccGCg -3'
miRNA:   3'- gCUCaugCUACGAGa------UGCCCGGCU--UG- -5'
2902 3' -53.6 NC_001493.1 + 2084 0.73 0.664798
Target:  5'- ----cAgGGUGCUCUuuGGGCCGAGCu -3'
miRNA:   3'- gcucaUgCUACGAGAugCCCGGCUUG- -5'
2902 3' -53.6 NC_001493.1 + 117639 0.73 0.664798
Target:  5'- ----cAgGGUGCUCUuuGGGCCGAGCu -3'
miRNA:   3'- gcucaUgCUACGAGAugCCCGGCUUG- -5'
2902 3' -53.6 NC_001493.1 + 82453 0.78 0.39812
Target:  5'- aCGAuGUGCGAgacGCUCUAcgauCGGGUCGAACu -3'
miRNA:   3'- -GCU-CAUGCUa--CGAGAU----GCCCGGCUUG- -5'
2902 3' -53.6 NC_001493.1 + 29319 1.11 0.00342
Target:  5'- gCGAGUACGAUGCUCUACGGGCCGAACg -3'
miRNA:   3'- -GCUCAUGCUACGAGAUGCCCGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.