miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2902 5' -57 NC_001493.1 + 51023 0.66 0.828329
Target:  5'- gGGUCCGGcCCAcagcucgcucAAGGuGGugGCaGCUCu -3'
miRNA:   3'- gCCGGGCCuGGU----------UUUU-CCugCG-CGAG- -5'
2902 5' -57 NC_001493.1 + 36878 0.67 0.818958
Target:  5'- uCGGCCaggguuaCGGACCGGAGAGGGuCGgGg-- -3'
miRNA:   3'- -GCCGG-------GCCUGGUUUUUCCU-GCgCgag -5'
2902 5' -57 NC_001493.1 + 26117 0.67 0.818958
Target:  5'- gGGCUCGGAaagaCGAAGaaucacuGGGACgGCGCg- -3'
miRNA:   3'- gCCGGGCCUg---GUUUU-------UCCUG-CGCGag -5'
2902 5' -57 NC_001493.1 + 90627 0.67 0.811137
Target:  5'- --cUCCGGGCCAccauGGACgguGCGCUCg -3'
miRNA:   3'- gccGGGCCUGGUuuuuCCUG---CGCGAG- -5'
2902 5' -57 NC_001493.1 + 5986 0.67 0.802293
Target:  5'- -cGUCCGGAUCAucGAGAGGACGUuucccgggggaGCUa -3'
miRNA:   3'- gcCGGGCCUGGU--UUUUCCUGCG-----------CGAg -5'
2902 5' -57 NC_001493.1 + 40816 0.67 0.802293
Target:  5'- gGGUCCGaGCCGu---GGACGCGUa- -3'
miRNA:   3'- gCCGGGCcUGGUuuuuCCUGCGCGag -5'
2902 5' -57 NC_001493.1 + 121540 0.67 0.802293
Target:  5'- -cGUCCGGAUCAucGAGAGGACGUuucccgggggaGCUa -3'
miRNA:   3'- gcCGGGCCUGGU--UUUUCCUGCG-----------CGAg -5'
2902 5' -57 NC_001493.1 + 6071 0.67 0.802293
Target:  5'- -cGUCCGGAUCAucGAGAGGACGUuucccgggggaGCUg -3'
miRNA:   3'- gcCGGGCCUGGU--UUUUCCUGCG-----------CGAg -5'
2902 5' -57 NC_001493.1 + 121625 0.67 0.802293
Target:  5'- -cGUCCGGAUCAucGAGAGGACGUuucccgggggaGCUg -3'
miRNA:   3'- gcCGGGCCUGGU--UUUUCCUGCG-----------CGAg -5'
2902 5' -57 NC_001493.1 + 64746 0.67 0.793296
Target:  5'- cCGGCCCGuuGGCCccguuGAGGGuCGCcCUCu -3'
miRNA:   3'- -GCCGGGC--CUGGuu---UUUCCuGCGcGAG- -5'
2902 5' -57 NC_001493.1 + 87133 0.67 0.793296
Target:  5'- aGGUCCGcaACCG---GGGGCGCGCg- -3'
miRNA:   3'- gCCGGGCc-UGGUuuuUCCUGCGCGag -5'
2902 5' -57 NC_001493.1 + 21045 0.67 0.793296
Target:  5'- gGGCCCacACgAGAGAGGAucuucuugaagaCGUGCUCg -3'
miRNA:   3'- gCCGGGccUGgUUUUUCCU------------GCGCGAG- -5'
2902 5' -57 NC_001493.1 + 11094 0.67 0.784152
Target:  5'- gGGCUCGacGACCcgu-GGGACGgaCGCUCa -3'
miRNA:   3'- gCCGGGC--CUGGuuuuUCCUGC--GCGAG- -5'
2902 5' -57 NC_001493.1 + 89029 0.67 0.784152
Target:  5'- aGGCgCGGAgucaCCAcgcgcguacaugGGGAGGAcgcCGCGCUCc -3'
miRNA:   3'- gCCGgGCCU----GGU------------UUUUCCU---GCGCGAG- -5'
2902 5' -57 NC_001493.1 + 126607 0.67 0.784152
Target:  5'- gGGCUCGacGACCcgu-GGGACGgaCGCUCa -3'
miRNA:   3'- gCCGGGC--CUGGuuuuUCCUGC--GCGAG- -5'
2902 5' -57 NC_001493.1 + 126649 0.67 0.784152
Target:  5'- gGGCUCGacGACCcgu-GGGACGgaCGCUCa -3'
miRNA:   3'- gCCGGGC--CUGGuuuuUCCUGC--GCGAG- -5'
2902 5' -57 NC_001493.1 + 120756 0.67 0.784152
Target:  5'- aCGGUCUcGACCcc-GAGGGCuCGCUCa -3'
miRNA:   3'- -GCCGGGcCUGGuuuUUCCUGcGCGAG- -5'
2902 5' -57 NC_001493.1 + 5202 0.67 0.784152
Target:  5'- aCGGUCUcGACCcc-GAGGGCuCGCUCa -3'
miRNA:   3'- -GCCGGGcCUGGuuuUUCCUGcGCGAG- -5'
2902 5' -57 NC_001493.1 + 11052 0.67 0.784152
Target:  5'- gGGCUCGacGACCcgu-GGGACGgaCGCUCa -3'
miRNA:   3'- gCCGGGC--CUGGuuuuUCCUGC--GCGAG- -5'
2902 5' -57 NC_001493.1 + 87006 0.67 0.78323
Target:  5'- uGGCgugacgaCCGGACCcgac-GGugGCGCUg -3'
miRNA:   3'- gCCG-------GGCCUGGuuuuuCCugCGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.