miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 164245 0.66 0.827617
Target:  5'- cCAUCAGUgggGCCUGgUGGGCCAccUCc -3'
miRNA:   3'- cGUGGUCG---UGGACgACCCGGUcuAGa -5'
29020 3' -58.4 NC_006146.1 + 128194 0.66 0.827617
Target:  5'- -gGCCcaggggGGCGCCgcgGCgccGGGCCAGAcgcUCUu -3'
miRNA:   3'- cgUGG------UCGUGGa--CGa--CCCGGUCU---AGA- -5'
29020 3' -58.4 NC_006146.1 + 152467 0.66 0.827617
Target:  5'- uGCACCGGCugCUGCgacaucUGGcGCguGcgCc -3'
miRNA:   3'- -CGUGGUCGugGACG------ACC-CGguCuaGa -5'
29020 3' -58.4 NC_006146.1 + 50688 0.66 0.827617
Target:  5'- gGCGucccuCCGGCAcuucCCUGUUaGaGGCCGGGUCa -3'
miRNA:   3'- -CGU-----GGUCGU----GGACGA-C-CCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 147048 0.66 0.819187
Target:  5'- ---aCGGUACCacGCaaUGGGCCAGGUCc -3'
miRNA:   3'- cgugGUCGUGGa-CG--ACCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 42450 0.66 0.819187
Target:  5'- cCGCCAGCAUg-GC--GGCCGGGUCg -3'
miRNA:   3'- cGUGGUCGUGgaCGacCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 104212 0.66 0.819187
Target:  5'- uGCAUCuGCACggggaaGCUGGGCUuccGGGUCa -3'
miRNA:   3'- -CGUGGuCGUGga----CGACCCGG---UCUAGa -5'
29020 3' -58.4 NC_006146.1 + 141892 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 144970 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 148048 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 151126 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 157282 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 154204 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 90809 0.66 0.815767
Target:  5'- aGCACCcaguucgccacccaGGCGCUgUGCUGGGaCCgcguucgAGAUCa -3'
miRNA:   3'- -CGUGG--------------UCGUGG-ACGACCC-GG-------UCUAGa -5'
29020 3' -58.4 NC_006146.1 + 126017 0.66 0.81059
Target:  5'- gGCGgUGGgcuuCugCUGCUGGGCCGGGa-- -3'
miRNA:   3'- -CGUgGUC----GugGACGACCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 155468 0.66 0.81059
Target:  5'- uGCGCCAgGCAggaCUGCagccGGGCCAGccccUCUg -3'
miRNA:   3'- -CGUGGU-CGUg--GACGa---CCCGGUCu---AGA- -5'
29020 3' -58.4 NC_006146.1 + 59451 0.66 0.81059
Target:  5'- uCACUGGCACga-CUGGGCCGGAa-- -3'
miRNA:   3'- cGUGGUCGUGgacGACCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 72566 0.66 0.81059
Target:  5'- gGCGCCGGCguggugcugggGCUUGCcgGGGUUAGAa-- -3'
miRNA:   3'- -CGUGGUCG-----------UGGACGa-CCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 122591 0.66 0.81059
Target:  5'- cCGCCAGCACCuccgacggUGgaGGGCgAGGg-- -3'
miRNA:   3'- cGUGGUCGUGG--------ACgaCCCGgUCUaga -5'
29020 3' -58.4 NC_006146.1 + 108292 0.66 0.802717
Target:  5'- cGCAgCAGCucccgcucauuGCCUGCggcggacgccauuucGGGCCAGAa-- -3'
miRNA:   3'- -CGUgGUCG-----------UGGACGa--------------CCCGGUCUaga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.