Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29020 | 3' | -58.4 | NC_006146.1 | + | 42450 | 0.66 | 0.819187 |
Target: 5'- cCGCCAGCAUg-GC--GGCCGGGUCg -3' miRNA: 3'- cGUGGUCGUGgaCGacCCGGUCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 64215 | 0.66 | 0.792928 |
Target: 5'- aGCuCCGGCAggaggcacaUCUGCgccUGGGCCGGggCg -3' miRNA: 3'- -CGuGGUCGU---------GGACG---ACCCGGUCuaGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 100747 | 0.66 | 0.78388 |
Target: 5'- cCACCAGCGCCccgGCcaGGaGCCAGGc-- -3' miRNA: 3'- cGUGGUCGUGGa--CGa-CC-CGGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 59451 | 0.66 | 0.81059 |
Target: 5'- uCACUGGCACga-CUGGGCCGGAa-- -3' miRNA: 3'- cGUGGUCGUGgacGACCCGGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 162847 | 0.66 | 0.792928 |
Target: 5'- -uGCCAGaCACCccCaGGGCCGGGUCc -3' miRNA: 3'- cgUGGUC-GUGGacGaCCCGGUCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 56492 | 0.66 | 0.792928 |
Target: 5'- gGCAUCAGCGCgCgcaGUcGGGCCgcgGGGUCg -3' miRNA: 3'- -CGUGGUCGUG-Ga--CGaCCCGG---UCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 170102 | 0.66 | 0.801834 |
Target: 5'- -gGCCGGCGCCgcagGggGGGCCGGcggggcgucccGUCg -3' miRNA: 3'- cgUGGUCGUGGa---CgaCCCGGUC-----------UAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 50688 | 0.66 | 0.827617 |
Target: 5'- gGCGucccuCCGGCAcuucCCUGUUaGaGGCCGGGUCa -3' miRNA: 3'- -CGU-----GGUCGU----GGACGA-C-CCGGUCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 108292 | 0.66 | 0.802717 |
Target: 5'- cGCAgCAGCucccgcucauuGCCUGCggcggacgccauuucGGGCCAGAa-- -3' miRNA: 3'- -CGUgGUCG-----------UGGACGa--------------CCCGGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 72504 | 0.66 | 0.801834 |
Target: 5'- gGCugCAGCGCCUGCgGaGGagCGGAcggCUg -3' miRNA: 3'- -CGugGUCGUGGACGaC-CCg-GUCUa--GA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 168146 | 0.66 | 0.801834 |
Target: 5'- cGgGCUuGgGCCUGCgaGGGCCGGGUa- -3' miRNA: 3'- -CgUGGuCgUGGACGa-CCCGGUCUAga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 122591 | 0.66 | 0.81059 |
Target: 5'- cCGCCAGCACCuccgacggUGgaGGGCgAGGg-- -3' miRNA: 3'- cGUGGUCGUGG--------ACgaCCCGgUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 157282 | 0.66 | 0.819187 |
Target: 5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3' miRNA: 3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 154204 | 0.66 | 0.819187 |
Target: 5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3' miRNA: 3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 151126 | 0.66 | 0.819187 |
Target: 5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3' miRNA: 3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 148048 | 0.66 | 0.819187 |
Target: 5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3' miRNA: 3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 144970 | 0.66 | 0.819187 |
Target: 5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3' miRNA: 3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 141892 | 0.66 | 0.819187 |
Target: 5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3' miRNA: 3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 104212 | 0.66 | 0.819187 |
Target: 5'- uGCAUCuGCACggggaaGCUGGGCUuccGGGUCa -3' miRNA: 3'- -CGUGGuCGUGga----CGACCCGG---UCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 90809 | 0.66 | 0.815767 |
Target: 5'- aGCACCcaguucgccacccaGGCGCUgUGCUGGGaCCgcguucgAGAUCa -3' miRNA: 3'- -CGUGG--------------UCGUGG-ACGACCC-GG-------UCUAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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