miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 154204 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 122591 0.66 0.81059
Target:  5'- cCGCCAGCACCuccgacggUGgaGGGCgAGGg-- -3'
miRNA:   3'- cGUGGUCGUGG--------ACgaCCCGgUCUaga -5'
29020 3' -58.4 NC_006146.1 + 168146 0.66 0.801834
Target:  5'- cGgGCUuGgGCCUGCgaGGGCCGGGUa- -3'
miRNA:   3'- -CgUGGuCgUGGACGa-CCCGGUCUAga -5'
29020 3' -58.4 NC_006146.1 + 72504 0.66 0.801834
Target:  5'- gGCugCAGCGCCUGCgGaGGagCGGAcggCUg -3'
miRNA:   3'- -CGugGUCGUGGACGaC-CCg-GUCUa--GA- -5'
29020 3' -58.4 NC_006146.1 + 100747 0.66 0.78388
Target:  5'- cCACCAGCGCCccgGCcaGGaGCCAGGc-- -3'
miRNA:   3'- cGUGGUCGUGGa--CGa-CC-CGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 42450 0.66 0.819187
Target:  5'- cCGCCAGCAUg-GC--GGCCGGGUCg -3'
miRNA:   3'- cGUGGUCGUGgaCGacCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 64215 0.66 0.792928
Target:  5'- aGCuCCGGCAggaggcacaUCUGCgccUGGGCCGGggCg -3'
miRNA:   3'- -CGuGGUCGU---------GGACG---ACCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 157282 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 61814 0.67 0.727095
Target:  5'- cGCGCCGGCACg-GCacGGGCgGGGUg- -3'
miRNA:   3'- -CGUGGUCGUGgaCGa-CCCGgUCUAga -5'
29020 3' -58.4 NC_006146.1 + 42706 0.67 0.774698
Target:  5'- aGCcccCCAGCGCCcGCUcGGGCUggcagccgcGGAUCc -3'
miRNA:   3'- -CGu--GGUCGUGGaCGA-CCCGG---------UCUAGa -5'
29020 3' -58.4 NC_006146.1 + 146055 0.67 0.727095
Target:  5'- aGCugCAGCACCUGCuuguUGGugacCCGGAc-- -3'
miRNA:   3'- -CGugGUCGUGGACG----ACCc---GGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 42822 0.67 0.74644
Target:  5'- gGCcCCucccGCACCUGCaUGaGGCCGGugGUCUu -3'
miRNA:   3'- -CGuGGu---CGUGGACG-AC-CCGGUC--UAGA- -5'
29020 3' -58.4 NC_006146.1 + 119250 0.67 0.74644
Target:  5'- gGCACCGGC-CCUGgccccCUGGGaguCCAGAg-- -3'
miRNA:   3'- -CGUGGUCGuGGAC-----GACCC---GGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 14053 0.67 0.774698
Target:  5'- gGCGCaAGCGCCggcugGCUGcGGuccucCCGGGUCUg -3'
miRNA:   3'- -CGUGgUCGUGGa----CGAC-CC-----GGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 120963 0.67 0.736812
Target:  5'- -aACCGucacgaguGCGCgCUGCUGGGCCAcaGGUUa -3'
miRNA:   3'- cgUGGU--------CGUG-GACGACCCGGU--CUAGa -5'
29020 3' -58.4 NC_006146.1 + 69390 0.67 0.736812
Target:  5'- aGCGCCGGUACUUGUUGaGGaaCAcGGUCUg -3'
miRNA:   3'- -CGUGGUCGUGGACGAC-CCg-GU-CUAGA- -5'
29020 3' -58.4 NC_006146.1 + 156906 0.67 0.765392
Target:  5'- aGCACCAGCccgGCCgagGcCUGGGUggCGGcgCUg -3'
miRNA:   3'- -CGUGGUCG---UGGa--C-GACCCG--GUCuaGA- -5'
29020 3' -58.4 NC_006146.1 + 98435 0.67 0.764455
Target:  5'- aGCGCCcagaaccgguuucGGCGCC-GCccggGGGCCAGucUCUg -3'
miRNA:   3'- -CGUGG-------------UCGUGGaCGa---CCCGGUCu-AGA- -5'
29020 3' -58.4 NC_006146.1 + 40991 0.67 0.727095
Target:  5'- cGCGCCGGCGCCcca-GGGCgCAGAg-- -3'
miRNA:   3'- -CGUGGUCGUGGacgaCCCG-GUCUaga -5'
29020 3' -58.4 NC_006146.1 + 13557 0.67 0.74644
Target:  5'- gGCGCCgGGCGCCggGCUGcgcaagcaGGCCGGGg-- -3'
miRNA:   3'- -CGUGG-UCGUGGa-CGAC--------CCGGUCUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.