miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 61814 0.67 0.727095
Target:  5'- cGCGCCGGCACg-GCacGGGCgGGGUg- -3'
miRNA:   3'- -CGUGGUCGUGgaCGa-CCCGgUCUAga -5'
29020 3' -58.4 NC_006146.1 + 156906 0.67 0.765392
Target:  5'- aGCACCAGCccgGCCgagGcCUGGGUggCGGcgCUg -3'
miRNA:   3'- -CGUGGUCG---UGGa--C-GACCCG--GUCuaGA- -5'
29020 3' -58.4 NC_006146.1 + 162388 0.67 0.765392
Target:  5'- cGCGCCcGCGCCcgggaccccGgUGGGCCAGGa-- -3'
miRNA:   3'- -CGUGGuCGUGGa--------CgACCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 164003 0.67 0.755021
Target:  5'- uGCACCAGaguuGCCUaauaggaGCuUGGGUCAGAUa- -3'
miRNA:   3'- -CGUGGUCg---UGGA-------CG-ACCCGGUCUAga -5'
29020 3' -58.4 NC_006146.1 + 119250 0.67 0.74644
Target:  5'- gGCACCGGC-CCUGgccccCUGGGaguCCAGAg-- -3'
miRNA:   3'- -CGUGGUCGuGGAC-----GACCC---GGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 149112 0.68 0.697499
Target:  5'- cGCGcCCGGCAuCCcGCUGGGCUuAGAa-- -3'
miRNA:   3'- -CGU-GGUCGU-GGaCGACCCGG-UCUaga -5'
29020 3' -58.4 NC_006146.1 + 116888 0.68 0.677485
Target:  5'- cGCAgCAGUGCCUGCUccaGGGCU--AUCa -3'
miRNA:   3'- -CGUgGUCGUGGACGA---CCCGGucUAGa -5'
29020 3' -58.4 NC_006146.1 + 142869 0.68 0.70743
Target:  5'- cCACCuGCccuCCgGCUGGGUCGGAcggUCUg -3'
miRNA:   3'- cGUGGuCGu--GGaCGACCCGGUCU---AGA- -5'
29020 3' -58.4 NC_006146.1 + 149979 0.68 0.70743
Target:  5'- -gGCCAGgGCCUGCaggucGGCCGGAcUCa -3'
miRNA:   3'- cgUGGUCgUGGACGac---CCGGUCU-AGa -5'
29020 3' -58.4 NC_006146.1 + 46583 0.68 0.70743
Target:  5'- uGCGCCAGCagcgucaugGCCacgaugggGUUGucGGCCAGGUCUu -3'
miRNA:   3'- -CGUGGUCG---------UGGa-------CGAC--CCGGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 155078 0.68 0.70743
Target:  5'- uCGCuCGGCucgaUGCcGGGCCAGAUCa -3'
miRNA:   3'- cGUG-GUCGugg-ACGaCCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 142678 0.68 0.70743
Target:  5'- cCACCuGCccuCCgGCUGGGUCGGAcggUCUg -3'
miRNA:   3'- cGUGGuCGu--GGaCGACCCGGUCU---AGA- -5'
29020 3' -58.4 NC_006146.1 + 12611 0.68 0.716314
Target:  5'- uGCAUguGCuacgagaaugacaACCcgggGCUGGGCCAGAg-- -3'
miRNA:   3'- -CGUGguCG-------------UGGa---CGACCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 41726 0.68 0.70743
Target:  5'- aGUACUGGUACCUGCUcuaccGGGCCcugAGAc-- -3'
miRNA:   3'- -CGUGGUCGUGGACGA-----CCCGG---UCUaga -5'
29020 3' -58.4 NC_006146.1 + 131132 0.68 0.697499
Target:  5'- -aGCCAGCACCUGCcGcGUCugcGAUCUg -3'
miRNA:   3'- cgUGGUCGUGGACGaCcCGGu--CUAGA- -5'
29020 3' -58.4 NC_006146.1 + 18962 0.68 0.677485
Target:  5'- uGCGCCAGCGgccCCUagagagggcgGCaGGGCCGGAg-- -3'
miRNA:   3'- -CGUGGUCGU---GGA----------CGaCCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 120214 0.68 0.70743
Target:  5'- -uGCCGGUcgguGCCUGUgGGGCCGGGg-- -3'
miRNA:   3'- cgUGGUCG----UGGACGaCCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 88261 0.69 0.647211
Target:  5'- gGCAaaauCCGGCGugUGCUGGGUCGGGccUCUg -3'
miRNA:   3'- -CGU----GGUCGUggACGACCCGGUCU--AGA- -5'
29020 3' -58.4 NC_006146.1 + 147315 0.69 0.647211
Target:  5'- -aGCguGCACCUggaagacgcaGCUGGGgUAGAUCUu -3'
miRNA:   3'- cgUGguCGUGGA----------CGACCCgGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 71450 0.69 0.626956
Target:  5'- gGCACCuGGCGCCgaggaGCgaGGGCCucaugcuccuGGAUCUg -3'
miRNA:   3'- -CGUGG-UCGUGGa----CGa-CCCGG----------UCUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.