miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 56438 1.09 0.001657
Target:  5'- cGCACCAGCACCUGCUGGGCCAGAUCUc -3'
miRNA:   3'- -CGUGGUCGUGGACGACCCGGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 106635 0.76 0.292718
Target:  5'- uGC-CgCAGCGCCUGCUGcGGCCGGcugGUCa -3'
miRNA:   3'- -CGuG-GUCGUGGACGAC-CCGGUC---UAGa -5'
29020 3' -58.4 NC_006146.1 + 169170 0.75 0.327965
Target:  5'- -gGCCGGCGCCUGCaggggGGGCCGGcggggcgucccGUCg -3'
miRNA:   3'- cgUGGUCGUGGACGa----CCCGGUC-----------UAGa -5'
29020 3' -58.4 NC_006146.1 + 168238 0.75 0.327965
Target:  5'- -gGCCGGCGCCUGCaggggGGGCCGGcggggcgucccGUCg -3'
miRNA:   3'- cgUGGUCGUGGACGa----CCCGGUC-----------UAGa -5'
29020 3' -58.4 NC_006146.1 + 167306 0.75 0.327965
Target:  5'- -gGCCGGCGCCUGCaggggGGGCCGGcggggcgucccGUCg -3'
miRNA:   3'- cgUGGUCGUGGACGa----CCCGGUC-----------UAGa -5'
29020 3' -58.4 NC_006146.1 + 20123 0.75 0.335381
Target:  5'- gGC-CCGGCACCUGCUggGGGCCAa---- -3'
miRNA:   3'- -CGuGGUCGUGGACGA--CCCGGUcuaga -5'
29020 3' -58.4 NC_006146.1 + 153300 0.74 0.382411
Target:  5'- uGCuCCAgGCACCagGCccGGGCCAGGUCg -3'
miRNA:   3'- -CGuGGU-CGUGGa-CGa-CCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 54027 0.73 0.407517
Target:  5'- gGCACUgcuGCGCCUgGCcGGGCCGGAUg- -3'
miRNA:   3'- -CGUGGu--CGUGGA-CGaCCCGGUCUAga -5'
29020 3' -58.4 NC_006146.1 + 125150 0.73 0.410942
Target:  5'- --cCCAGUAUCUGUuuaacgugaagacucUGGGCCAGGUCa -3'
miRNA:   3'- cguGGUCGUGGACG---------------ACCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 114240 0.73 0.416112
Target:  5'- gGC-CCGGCACCUcagGgaGGGCCAGcUCg -3'
miRNA:   3'- -CGuGGUCGUGGA---CgaCCCGGUCuAGa -5'
29020 3' -58.4 NC_006146.1 + 57990 0.73 0.416112
Target:  5'- cGCACCAGgACgaGCUGGaggcCCGGGUCUc -3'
miRNA:   3'- -CGUGGUCgUGgaCGACCc---GGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 14348 0.72 0.451569
Target:  5'- cGUugCGGC-CCUGCUggugGGGUCGGGUCc -3'
miRNA:   3'- -CGugGUCGuGGACGA----CCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 66088 0.72 0.469906
Target:  5'- uCACCugcgAGUAUCUGUUGGGCCGGGggagCUa -3'
miRNA:   3'- cGUGG----UCGUGGACGACCCGGUCUa---GA- -5'
29020 3' -58.4 NC_006146.1 + 61598 0.71 0.507668
Target:  5'- gGCugCAGCgGCCgcgGCcgGGGCCgAGAUCc -3'
miRNA:   3'- -CGugGUCG-UGGa--CGa-CCCGG-UCUAGa -5'
29020 3' -58.4 NC_006146.1 + 122141 0.71 0.507668
Target:  5'- aGCugCGGCGgCUGCUGGagGCCGGGc-- -3'
miRNA:   3'- -CGugGUCGUgGACGACC--CGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 94616 0.71 0.527029
Target:  5'- cGCGuCCAGC-CCacguaCUGGGCCGGGUCc -3'
miRNA:   3'- -CGU-GGUCGuGGac---GACCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 52804 0.71 0.530934
Target:  5'- uGCGCCAGCuCCUGaccuucCUGGGugaagaggcugacaaCCAGAUCa -3'
miRNA:   3'- -CGUGGUCGuGGAC------GACCC---------------GGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 168338 0.71 0.536812
Target:  5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3'
miRNA:   3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 167406 0.71 0.536812
Target:  5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3'
miRNA:   3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 169270 0.71 0.536812
Target:  5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3'
miRNA:   3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.