miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 167406 0.71 0.536812
Target:  5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3'
miRNA:   3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 104673 0.71 0.550613
Target:  5'- -uGCCuGCGCCgcgauagaggggcaGCUGGGCCuGGAUCUc -3'
miRNA:   3'- cgUGGuCGUGGa-------------CGACCCGG-UCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 74873 0.7 0.556561
Target:  5'- -gGCCGGCACCaUGCcgGuGGCaCAGAUCc -3'
miRNA:   3'- cgUGGUCGUGG-ACGa-C-CCG-GUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 146834 0.7 0.586551
Target:  5'- cGCGCCAGCguagagcccggGCCUgGCUcgGGGCCGcGUCa -3'
miRNA:   3'- -CGUGGUCG-----------UGGA-CGA--CCCGGUcUAGa -5'
29020 3' -58.4 NC_006146.1 + 154667 0.7 0.603686
Target:  5'- uGCACCGugguggcggggggcGCugCUGCUGGGU--GGUCUg -3'
miRNA:   3'- -CGUGGU--------------CGugGACGACCCGguCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 24881 0.7 0.610761
Target:  5'- aGUGCCAGgAgCUGCcccccugccccucggUGGGCCAGAUa- -3'
miRNA:   3'- -CGUGGUCgUgGACG---------------ACCCGGUCUAga -5'
29020 3' -58.4 NC_006146.1 + 71450 0.69 0.626956
Target:  5'- gGCACCuGGCGCCgaggaGCgaGGGCCucaugcuccuGGAUCUg -3'
miRNA:   3'- -CGUGG-UCGUGGa----CGa-CCCGG----------UCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 59895 0.69 0.636072
Target:  5'- cGgGCCAGCacgcuggccaACCUGCUGGugcgcggcuacgaGCUGGGUCUg -3'
miRNA:   3'- -CgUGGUCG----------UGGACGACC-------------CGGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 88261 0.69 0.647211
Target:  5'- gGCAaaauCCGGCGugUGCUGGGUCGGGccUCUg -3'
miRNA:   3'- -CGU----GGUCGUggACGACCCGGUCU--AGA- -5'
29020 3' -58.4 NC_006146.1 + 147315 0.69 0.647211
Target:  5'- -aGCguGCACCUggaagacgcaGCUGGGgUAGAUCUu -3'
miRNA:   3'- cgUGguCGUGGA----------CGACCCgGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 129552 0.69 0.647211
Target:  5'- cCACCAcCGCCagGCccUGGGCCAGAUa- -3'
miRNA:   3'- cGUGGUcGUGGa-CG--ACCCGGUCUAga -5'
29020 3' -58.4 NC_006146.1 + 85611 0.69 0.657325
Target:  5'- -aGCUGGCACCgggGCaaaGGGCCAGAg-- -3'
miRNA:   3'- cgUGGUCGUGGa--CGa--CCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 18962 0.68 0.677485
Target:  5'- uGCGCCAGCGgccCCUagagagggcgGCaGGGCCGGAg-- -3'
miRNA:   3'- -CGUGGUCGU---GGA----------CGaCCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 116888 0.68 0.677485
Target:  5'- cGCAgCAGUGCCUGCUccaGGGCU--AUCa -3'
miRNA:   3'- -CGUgGUCGUGGACGA---CCCGGucUAGa -5'
29020 3' -58.4 NC_006146.1 + 131132 0.68 0.697499
Target:  5'- -aGCCAGCACCUGCcGcGUCugcGAUCUg -3'
miRNA:   3'- cgUGGUCGUGGACGaCcCGGu--CUAGA- -5'
29020 3' -58.4 NC_006146.1 + 149112 0.68 0.697499
Target:  5'- cGCGcCCGGCAuCCcGCUGGGCUuAGAa-- -3'
miRNA:   3'- -CGU-GGUCGU-GGaCGACCCGG-UCUaga -5'
29020 3' -58.4 NC_006146.1 + 149979 0.68 0.70743
Target:  5'- -gGCCAGgGCCUGCaggucGGCCGGAcUCa -3'
miRNA:   3'- cgUGGUCgUGGACGac---CCGGUCU-AGa -5'
29020 3' -58.4 NC_006146.1 + 120214 0.68 0.70743
Target:  5'- -uGCCGGUcgguGCCUGUgGGGCCGGGg-- -3'
miRNA:   3'- cgUGGUCG----UGGACGaCCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 46583 0.68 0.70743
Target:  5'- uGCGCCAGCagcgucaugGCCacgaugggGUUGucGGCCAGGUCUu -3'
miRNA:   3'- -CGUGGUCG---------UGGa-------CGAC--CCGGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 41726 0.68 0.70743
Target:  5'- aGUACUGGUACCUGCUcuaccGGGCCcugAGAc-- -3'
miRNA:   3'- -CGUGGUCGUGGACGA-----CCCGG---UCUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.