Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29020 | 3' | -58.4 | NC_006146.1 | + | 142678 | 0.68 | 0.70743 |
Target: 5'- cCACCuGCccuCCgGCUGGGUCGGAcggUCUg -3' miRNA: 3'- cGUGGuCGu--GGaCGACCCGGUCU---AGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 142869 | 0.68 | 0.70743 |
Target: 5'- cCACCuGCccuCCgGCUGGGUCGGAcggUCUg -3' miRNA: 3'- cGUGGuCGu--GGaCGACCCGGUCU---AGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 41726 | 0.68 | 0.70743 |
Target: 5'- aGUACUGGUACCUGCUcuaccGGGCCcugAGAc-- -3' miRNA: 3'- -CGUGGUCGUGGACGA-----CCCGG---UCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 12611 | 0.68 | 0.716314 |
Target: 5'- uGCAUguGCuacgagaaugacaACCcgggGCUGGGCCAGAg-- -3' miRNA: 3'- -CGUGguCG-------------UGGa---CGACCCGGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 128041 | 0.67 | 0.727095 |
Target: 5'- cCACCAGUggaACCUGCgcgUGGGCCuGGc-- -3' miRNA: 3'- cGUGGUCG---UGGACG---ACCCGGuCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 40991 | 0.67 | 0.727095 |
Target: 5'- cGCGCCGGCGCCcca-GGGCgCAGAg-- -3' miRNA: 3'- -CGUGGUCGUGGacgaCCCG-GUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 61814 | 0.67 | 0.727095 |
Target: 5'- cGCGCCGGCACg-GCacGGGCgGGGUg- -3' miRNA: 3'- -CGUGGUCGUGgaCGa-CCCGgUCUAga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 146055 | 0.67 | 0.727095 |
Target: 5'- aGCugCAGCACCUGCuuguUGGugacCCGGAc-- -3' miRNA: 3'- -CGugGUCGUGGACG----ACCc---GGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 120963 | 0.67 | 0.736812 |
Target: 5'- -aACCGucacgaguGCGCgCUGCUGGGCCAcaGGUUa -3' miRNA: 3'- cgUGGU--------CGUG-GACGACCCGGU--CUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 69390 | 0.67 | 0.736812 |
Target: 5'- aGCGCCGGUACUUGUUGaGGaaCAcGGUCUg -3' miRNA: 3'- -CGUGGUCGUGGACGAC-CCg-GU-CUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 13557 | 0.67 | 0.74644 |
Target: 5'- gGCGCCgGGCGCCggGCUGcgcaagcaGGCCGGGg-- -3' miRNA: 3'- -CGUGG-UCGUGGa-CGAC--------CCGGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 119250 | 0.67 | 0.74644 |
Target: 5'- gGCACCGGC-CCUGgccccCUGGGaguCCAGAg-- -3' miRNA: 3'- -CGUGGUCGuGGAC-----GACCC---GGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 42822 | 0.67 | 0.74644 |
Target: 5'- gGCcCCucccGCACCUGCaUGaGGCCGGugGUCUu -3' miRNA: 3'- -CGuGGu---CGUGGACG-AC-CCGGUC--UAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 164003 | 0.67 | 0.755021 |
Target: 5'- uGCACCAGaguuGCCUaauaggaGCuUGGGUCAGAUa- -3' miRNA: 3'- -CGUGGUCg---UGGA-------CG-ACCCGGUCUAga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 125295 | 0.67 | 0.755969 |
Target: 5'- -gGCCAGCACuCUGaaGGGCguGGUa- -3' miRNA: 3'- cgUGGUCGUG-GACgaCCCGguCUAga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 98435 | 0.67 | 0.764455 |
Target: 5'- aGCGCCcagaaccgguuucGGCGCC-GCccggGGGCCAGucUCUg -3' miRNA: 3'- -CGUGG-------------UCGUGGaCGa---CCCGGUCu-AGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 19403 | 0.67 | 0.765392 |
Target: 5'- gGCugCAGgACaaGCacgGGuGCCAGAUCUu -3' miRNA: 3'- -CGugGUCgUGgaCGa--CC-CGGUCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 162388 | 0.67 | 0.765392 |
Target: 5'- cGCGCCcGCGCCcgggaccccGgUGGGCCAGGa-- -3' miRNA: 3'- -CGUGGuCGUGGa--------CgACCCGGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 156906 | 0.67 | 0.765392 |
Target: 5'- aGCACCAGCccgGCCgagGcCUGGGUggCGGcgCUg -3' miRNA: 3'- -CGUGGUCG---UGGa--C-GACCCG--GUCuaGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 14053 | 0.67 | 0.774698 |
Target: 5'- gGCGCaAGCGCCggcugGCUGcGGuccucCCGGGUCUg -3' miRNA: 3'- -CGUGgUCGUGGa----CGAC-CC-----GGUCUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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