Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29020 | 3' | -58.4 | NC_006146.1 | + | 168146 | 0.66 | 0.801834 |
Target: 5'- cGgGCUuGgGCCUGCgaGGGCCGGGUa- -3' miRNA: 3'- -CgUGGuCgUGGACGa-CCCGGUCUAga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 72504 | 0.66 | 0.801834 |
Target: 5'- gGCugCAGCGCCUGCgGaGGagCGGAcggCUg -3' miRNA: 3'- -CGugGUCGUGGACGaC-CCg-GUCUa--GA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 170102 | 0.66 | 0.801834 |
Target: 5'- -gGCCGGCGCCgcagGggGGGCCGGcggggcgucccGUCg -3' miRNA: 3'- cgUGGUCGUGGa---CgaCCCGGUC-----------UAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 56492 | 0.66 | 0.792928 |
Target: 5'- gGCAUCAGCGCgCgcaGUcGGGCCgcgGGGUCg -3' miRNA: 3'- -CGUGGUCGUG-Ga--CGaCCCGG---UCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 162847 | 0.66 | 0.792928 |
Target: 5'- -uGCCAGaCACCccCaGGGCCGGGUCc -3' miRNA: 3'- cgUGGUC-GUGGacGaCCCGGUCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 64215 | 0.66 | 0.792928 |
Target: 5'- aGCuCCGGCAggaggcacaUCUGCgccUGGGCCGGggCg -3' miRNA: 3'- -CGuGGUCGU---------GGACG---ACCCGGUCuaGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 156287 | 0.66 | 0.78388 |
Target: 5'- cCACgCAGCGCCaGCaGGGCaCAGAg-- -3' miRNA: 3'- cGUG-GUCGUGGaCGaCCCG-GUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 100747 | 0.66 | 0.78388 |
Target: 5'- cCACCAGCGCCccgGCcaGGaGCCAGGc-- -3' miRNA: 3'- cGUGGUCGUGGa--CGa-CC-CGGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 42706 | 0.67 | 0.774698 |
Target: 5'- aGCcccCCAGCGCCcGCUcGGGCUggcagccgcGGAUCc -3' miRNA: 3'- -CGu--GGUCGUGGaCGA-CCCGG---------UCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 14053 | 0.67 | 0.774698 |
Target: 5'- gGCGCaAGCGCCggcugGCUGcGGuccucCCGGGUCUg -3' miRNA: 3'- -CGUGgUCGUGGa----CGAC-CC-----GGUCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 162388 | 0.67 | 0.765392 |
Target: 5'- cGCGCCcGCGCCcgggaccccGgUGGGCCAGGa-- -3' miRNA: 3'- -CGUGGuCGUGGa--------CgACCCGGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 156906 | 0.67 | 0.765392 |
Target: 5'- aGCACCAGCccgGCCgagGcCUGGGUggCGGcgCUg -3' miRNA: 3'- -CGUGGUCG---UGGa--C-GACCCG--GUCuaGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 19403 | 0.67 | 0.765392 |
Target: 5'- gGCugCAGgACaaGCacgGGuGCCAGAUCUu -3' miRNA: 3'- -CGugGUCgUGgaCGa--CC-CGGUCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 98435 | 0.67 | 0.764455 |
Target: 5'- aGCGCCcagaaccgguuucGGCGCC-GCccggGGGCCAGucUCUg -3' miRNA: 3'- -CGUGG-------------UCGUGGaCGa---CCCGGUCu-AGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 125295 | 0.67 | 0.755969 |
Target: 5'- -gGCCAGCACuCUGaaGGGCguGGUa- -3' miRNA: 3'- cgUGGUCGUG-GACgaCCCGguCUAga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 164003 | 0.67 | 0.755021 |
Target: 5'- uGCACCAGaguuGCCUaauaggaGCuUGGGUCAGAUa- -3' miRNA: 3'- -CGUGGUCg---UGGA-------CG-ACCCGGUCUAga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 13557 | 0.67 | 0.74644 |
Target: 5'- gGCGCCgGGCGCCggGCUGcgcaagcaGGCCGGGg-- -3' miRNA: 3'- -CGUGG-UCGUGGa-CGAC--------CCGGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 119250 | 0.67 | 0.74644 |
Target: 5'- gGCACCGGC-CCUGgccccCUGGGaguCCAGAg-- -3' miRNA: 3'- -CGUGGUCGuGGAC-----GACCC---GGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 42822 | 0.67 | 0.74644 |
Target: 5'- gGCcCCucccGCACCUGCaUGaGGCCGGugGUCUu -3' miRNA: 3'- -CGuGGu---CGUGGACG-AC-CCGGUC--UAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 120963 | 0.67 | 0.736812 |
Target: 5'- -aACCGucacgaguGCGCgCUGCUGGGCCAcaGGUUa -3' miRNA: 3'- cgUGGU--------CGUG-GACGACCCGGU--CUAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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