miRNA display CGI


Results 41 - 60 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 69390 0.67 0.736812
Target:  5'- aGCGCCGGUACUUGUUGaGGaaCAcGGUCUg -3'
miRNA:   3'- -CGUGGUCGUGGACGAC-CCg-GU-CUAGA- -5'
29020 3' -58.4 NC_006146.1 + 40991 0.67 0.727095
Target:  5'- cGCGCCGGCGCCcca-GGGCgCAGAg-- -3'
miRNA:   3'- -CGUGGUCGUGGacgaCCCG-GUCUaga -5'
29020 3' -58.4 NC_006146.1 + 128041 0.67 0.727095
Target:  5'- cCACCAGUggaACCUGCgcgUGGGCCuGGc-- -3'
miRNA:   3'- cGUGGUCG---UGGACG---ACCCGGuCUaga -5'
29020 3' -58.4 NC_006146.1 + 61814 0.67 0.727095
Target:  5'- cGCGCCGGCACg-GCacGGGCgGGGUg- -3'
miRNA:   3'- -CGUGGUCGUGgaCGa-CCCGgUCUAga -5'
29020 3' -58.4 NC_006146.1 + 146055 0.67 0.727095
Target:  5'- aGCugCAGCACCUGCuuguUGGugacCCGGAc-- -3'
miRNA:   3'- -CGugGUCGUGGACG----ACCc---GGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 12611 0.68 0.716314
Target:  5'- uGCAUguGCuacgagaaugacaACCcgggGCUGGGCCAGAg-- -3'
miRNA:   3'- -CGUGguCG-------------UGGa---CGACCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 149979 0.68 0.70743
Target:  5'- -gGCCAGgGCCUGCaggucGGCCGGAcUCa -3'
miRNA:   3'- cgUGGUCgUGGACGac---CCGGUCU-AGa -5'
29020 3' -58.4 NC_006146.1 + 120214 0.68 0.70743
Target:  5'- -uGCCGGUcgguGCCUGUgGGGCCGGGg-- -3'
miRNA:   3'- cgUGGUCG----UGGACGaCCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 142869 0.68 0.70743
Target:  5'- cCACCuGCccuCCgGCUGGGUCGGAcggUCUg -3'
miRNA:   3'- cGUGGuCGu--GGaCGACCCGGUCU---AGA- -5'
29020 3' -58.4 NC_006146.1 + 142678 0.68 0.70743
Target:  5'- cCACCuGCccuCCgGCUGGGUCGGAcggUCUg -3'
miRNA:   3'- cGUGGuCGu--GGaCGACCCGGUCU---AGA- -5'
29020 3' -58.4 NC_006146.1 + 46583 0.68 0.70743
Target:  5'- uGCGCCAGCagcgucaugGCCacgaugggGUUGucGGCCAGGUCUu -3'
miRNA:   3'- -CGUGGUCG---------UGGa-------CGAC--CCGGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 155078 0.68 0.70743
Target:  5'- uCGCuCGGCucgaUGCcGGGCCAGAUCa -3'
miRNA:   3'- cGUG-GUCGugg-ACGaCCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 41726 0.68 0.70743
Target:  5'- aGUACUGGUACCUGCUcuaccGGGCCcugAGAc-- -3'
miRNA:   3'- -CGUGGUCGUGGACGA-----CCCGG---UCUaga -5'
29020 3' -58.4 NC_006146.1 + 131132 0.68 0.697499
Target:  5'- -aGCCAGCACCUGCcGcGUCugcGAUCUg -3'
miRNA:   3'- cgUGGUCGUGGACGaCcCGGu--CUAGA- -5'
29020 3' -58.4 NC_006146.1 + 149112 0.68 0.697499
Target:  5'- cGCGcCCGGCAuCCcGCUGGGCUuAGAa-- -3'
miRNA:   3'- -CGU-GGUCGU-GGaCGACCCGG-UCUaga -5'
29020 3' -58.4 NC_006146.1 + 116888 0.68 0.677485
Target:  5'- cGCAgCAGUGCCUGCUccaGGGCU--AUCa -3'
miRNA:   3'- -CGUgGUCGUGGACGA---CCCGGucUAGa -5'
29020 3' -58.4 NC_006146.1 + 18962 0.68 0.677485
Target:  5'- uGCGCCAGCGgccCCUagagagggcgGCaGGGCCGGAg-- -3'
miRNA:   3'- -CGUGGUCGU---GGA----------CGaCCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 85611 0.69 0.657325
Target:  5'- -aGCUGGCACCgggGCaaaGGGCCAGAg-- -3'
miRNA:   3'- cgUGGUCGUGGa--CGa--CCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 129552 0.69 0.647211
Target:  5'- cCACCAcCGCCagGCccUGGGCCAGAUa- -3'
miRNA:   3'- cGUGGUcGUGGa-CG--ACCCGGUCUAga -5'
29020 3' -58.4 NC_006146.1 + 88261 0.69 0.647211
Target:  5'- gGCAaaauCCGGCGugUGCUGGGUCGGGccUCUg -3'
miRNA:   3'- -CGU----GGUCGUggACGACCCGGUCU--AGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.