Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29020 | 3' | -58.4 | NC_006146.1 | + | 129552 | 0.69 | 0.647211 |
Target: 5'- cCACCAcCGCCagGCccUGGGCCAGAUa- -3' miRNA: 3'- cGUGGUcGUGGa-CG--ACCCGGUCUAga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 59895 | 0.69 | 0.636072 |
Target: 5'- cGgGCCAGCacgcuggccaACCUGCUGGugcgcggcuacgaGCUGGGUCUg -3' miRNA: 3'- -CgUGGUCG----------UGGACGACC-------------CGGUCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 71450 | 0.69 | 0.626956 |
Target: 5'- gGCACCuGGCGCCgaggaGCgaGGGCCucaugcuccuGGAUCUg -3' miRNA: 3'- -CGUGG-UCGUGGa----CGa-CCCGG----------UCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 24881 | 0.7 | 0.610761 |
Target: 5'- aGUGCCAGgAgCUGCcccccugccccucggUGGGCCAGAUa- -3' miRNA: 3'- -CGUGGUCgUgGACG---------------ACCCGGUCUAga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 154667 | 0.7 | 0.603686 |
Target: 5'- uGCACCGugguggcggggggcGCugCUGCUGGGU--GGUCUg -3' miRNA: 3'- -CGUGGU--------------CGugGACGACCCGguCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 146834 | 0.7 | 0.586551 |
Target: 5'- cGCGCCAGCguagagcccggGCCUgGCUcgGGGCCGcGUCa -3' miRNA: 3'- -CGUGGUCG-----------UGGA-CGA--CCCGGUcUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 74873 | 0.7 | 0.556561 |
Target: 5'- -gGCCGGCACCaUGCcgGuGGCaCAGAUCc -3' miRNA: 3'- cgUGGUCGUGG-ACGa-C-CCG-GUCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 104673 | 0.71 | 0.550613 |
Target: 5'- -uGCCuGCGCCgcgauagaggggcaGCUGGGCCuGGAUCUc -3' miRNA: 3'- cgUGGuCGUGGa-------------CGACCCGG-UCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 168338 | 0.71 | 0.536812 |
Target: 5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3' miRNA: 3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 170201 | 0.71 | 0.536812 |
Target: 5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3' miRNA: 3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 169270 | 0.71 | 0.536812 |
Target: 5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3' miRNA: 3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 167406 | 0.71 | 0.536812 |
Target: 5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3' miRNA: 3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 52804 | 0.71 | 0.530934 |
Target: 5'- uGCGCCAGCuCCUGaccuucCUGGGugaagaggcugacaaCCAGAUCa -3' miRNA: 3'- -CGUGGUCGuGGAC------GACCC---------------GGUCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 94616 | 0.71 | 0.527029 |
Target: 5'- cGCGuCCAGC-CCacguaCUGGGCCGGGUCc -3' miRNA: 3'- -CGU-GGUCGuGGac---GACCCGGUCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 61598 | 0.71 | 0.507668 |
Target: 5'- gGCugCAGCgGCCgcgGCcgGGGCCgAGAUCc -3' miRNA: 3'- -CGugGUCG-UGGa--CGa-CCCGG-UCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 122141 | 0.71 | 0.507668 |
Target: 5'- aGCugCGGCGgCUGCUGGagGCCGGGc-- -3' miRNA: 3'- -CGugGUCGUgGACGACC--CGGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 66088 | 0.72 | 0.469906 |
Target: 5'- uCACCugcgAGUAUCUGUUGGGCCGGGggagCUa -3' miRNA: 3'- cGUGG----UCGUGGACGACCCGGUCUa---GA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 14348 | 0.72 | 0.451569 |
Target: 5'- cGUugCGGC-CCUGCUggugGGGUCGGGUCc -3' miRNA: 3'- -CGugGUCGuGGACGA----CCCGGUCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 114240 | 0.73 | 0.416112 |
Target: 5'- gGC-CCGGCACCUcagGgaGGGCCAGcUCg -3' miRNA: 3'- -CGuGGUCGUGGA---CgaCCCGGUCuAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 57990 | 0.73 | 0.416112 |
Target: 5'- cGCACCAGgACgaGCUGGaggcCCGGGUCUc -3' miRNA: 3'- -CGUGGUCgUGgaCGACCc---GGUCUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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