miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 12611 0.68 0.716314
Target:  5'- uGCAUguGCuacgagaaugacaACCcgggGCUGGGCCAGAg-- -3'
miRNA:   3'- -CGUGguCG-------------UGGa---CGACCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 13557 0.67 0.74644
Target:  5'- gGCGCCgGGCGCCggGCUGcgcaagcaGGCCGGGg-- -3'
miRNA:   3'- -CGUGG-UCGUGGa-CGAC--------CCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 14053 0.67 0.774698
Target:  5'- gGCGCaAGCGCCggcugGCUGcGGuccucCCGGGUCUg -3'
miRNA:   3'- -CGUGgUCGUGGa----CGAC-CC-----GGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 14348 0.72 0.451569
Target:  5'- cGUugCGGC-CCUGCUggugGGGUCGGGUCc -3'
miRNA:   3'- -CGugGUCGuGGACGA----CCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 18962 0.68 0.677485
Target:  5'- uGCGCCAGCGgccCCUagagagggcgGCaGGGCCGGAg-- -3'
miRNA:   3'- -CGUGGUCGU---GGA----------CGaCCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 19403 0.67 0.765392
Target:  5'- gGCugCAGgACaaGCacgGGuGCCAGAUCUu -3'
miRNA:   3'- -CGugGUCgUGgaCGa--CC-CGGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 20123 0.75 0.335381
Target:  5'- gGC-CCGGCACCUGCUggGGGCCAa---- -3'
miRNA:   3'- -CGuGGUCGUGGACGA--CCCGGUcuaga -5'
29020 3' -58.4 NC_006146.1 + 24881 0.7 0.610761
Target:  5'- aGUGCCAGgAgCUGCcccccugccccucggUGGGCCAGAUa- -3'
miRNA:   3'- -CGUGGUCgUgGACG---------------ACCCGGUCUAga -5'
29020 3' -58.4 NC_006146.1 + 40991 0.67 0.727095
Target:  5'- cGCGCCGGCGCCcca-GGGCgCAGAg-- -3'
miRNA:   3'- -CGUGGUCGUGGacgaCCCG-GUCUaga -5'
29020 3' -58.4 NC_006146.1 + 41726 0.68 0.70743
Target:  5'- aGUACUGGUACCUGCUcuaccGGGCCcugAGAc-- -3'
miRNA:   3'- -CGUGGUCGUGGACGA-----CCCGG---UCUaga -5'
29020 3' -58.4 NC_006146.1 + 42450 0.66 0.819187
Target:  5'- cCGCCAGCAUg-GC--GGCCGGGUCg -3'
miRNA:   3'- cGUGGUCGUGgaCGacCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 42706 0.67 0.774698
Target:  5'- aGCcccCCAGCGCCcGCUcGGGCUggcagccgcGGAUCc -3'
miRNA:   3'- -CGu--GGUCGUGGaCGA-CCCGG---------UCUAGa -5'
29020 3' -58.4 NC_006146.1 + 42822 0.67 0.74644
Target:  5'- gGCcCCucccGCACCUGCaUGaGGCCGGugGUCUu -3'
miRNA:   3'- -CGuGGu---CGUGGACG-AC-CCGGUC--UAGA- -5'
29020 3' -58.4 NC_006146.1 + 46583 0.68 0.70743
Target:  5'- uGCGCCAGCagcgucaugGCCacgaugggGUUGucGGCCAGGUCUu -3'
miRNA:   3'- -CGUGGUCG---------UGGa-------CGAC--CCGGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 50688 0.66 0.827617
Target:  5'- gGCGucccuCCGGCAcuucCCUGUUaGaGGCCGGGUCa -3'
miRNA:   3'- -CGU-----GGUCGU----GGACGA-C-CCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 52804 0.71 0.530934
Target:  5'- uGCGCCAGCuCCUGaccuucCUGGGugaagaggcugacaaCCAGAUCa -3'
miRNA:   3'- -CGUGGUCGuGGAC------GACCC---------------GGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 54027 0.73 0.407517
Target:  5'- gGCACUgcuGCGCCUgGCcGGGCCGGAUg- -3'
miRNA:   3'- -CGUGGu--CGUGGA-CGaCCCGGUCUAga -5'
29020 3' -58.4 NC_006146.1 + 56438 1.09 0.001657
Target:  5'- cGCACCAGCACCUGCUGGGCCAGAUCUc -3'
miRNA:   3'- -CGUGGUCGUGGACGACCCGGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 56492 0.66 0.792928
Target:  5'- gGCAUCAGCGCgCgcaGUcGGGCCgcgGGGUCg -3'
miRNA:   3'- -CGUGGUCGUG-Ga--CGaCCCGG---UCUAGa -5'
29020 3' -58.4 NC_006146.1 + 57990 0.73 0.416112
Target:  5'- cGCACCAGgACgaGCUGGaggcCCGGGUCUc -3'
miRNA:   3'- -CGUGGUCgUGgaCGACCc---GGUCUAGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.