miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 59451 0.66 0.81059
Target:  5'- uCACUGGCACga-CUGGGCCGGAa-- -3'
miRNA:   3'- cGUGGUCGUGgacGACCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 59895 0.69 0.636072
Target:  5'- cGgGCCAGCacgcuggccaACCUGCUGGugcgcggcuacgaGCUGGGUCUg -3'
miRNA:   3'- -CgUGGUCG----------UGGACGACC-------------CGGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 61598 0.71 0.507668
Target:  5'- gGCugCAGCgGCCgcgGCcgGGGCCgAGAUCc -3'
miRNA:   3'- -CGugGUCG-UGGa--CGa-CCCGG-UCUAGa -5'
29020 3' -58.4 NC_006146.1 + 61814 0.67 0.727095
Target:  5'- cGCGCCGGCACg-GCacGGGCgGGGUg- -3'
miRNA:   3'- -CGUGGUCGUGgaCGa-CCCGgUCUAga -5'
29020 3' -58.4 NC_006146.1 + 64215 0.66 0.792928
Target:  5'- aGCuCCGGCAggaggcacaUCUGCgccUGGGCCGGggCg -3'
miRNA:   3'- -CGuGGUCGU---------GGACG---ACCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 66088 0.72 0.469906
Target:  5'- uCACCugcgAGUAUCUGUUGGGCCGGGggagCUa -3'
miRNA:   3'- cGUGG----UCGUGGACGACCCGGUCUa---GA- -5'
29020 3' -58.4 NC_006146.1 + 69390 0.67 0.736812
Target:  5'- aGCGCCGGUACUUGUUGaGGaaCAcGGUCUg -3'
miRNA:   3'- -CGUGGUCGUGGACGAC-CCg-GU-CUAGA- -5'
29020 3' -58.4 NC_006146.1 + 71450 0.69 0.626956
Target:  5'- gGCACCuGGCGCCgaggaGCgaGGGCCucaugcuccuGGAUCUg -3'
miRNA:   3'- -CGUGG-UCGUGGa----CGa-CCCGG----------UCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 72504 0.66 0.801834
Target:  5'- gGCugCAGCGCCUGCgGaGGagCGGAcggCUg -3'
miRNA:   3'- -CGugGUCGUGGACGaC-CCg-GUCUa--GA- -5'
29020 3' -58.4 NC_006146.1 + 72566 0.66 0.81059
Target:  5'- gGCGCCGGCguggugcugggGCUUGCcgGGGUUAGAa-- -3'
miRNA:   3'- -CGUGGUCG-----------UGGACGa-CCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 74873 0.7 0.556561
Target:  5'- -gGCCGGCACCaUGCcgGuGGCaCAGAUCc -3'
miRNA:   3'- cgUGGUCGUGG-ACGa-C-CCG-GUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 85611 0.69 0.657325
Target:  5'- -aGCUGGCACCgggGCaaaGGGCCAGAg-- -3'
miRNA:   3'- cgUGGUCGUGGa--CGa--CCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 88261 0.69 0.647211
Target:  5'- gGCAaaauCCGGCGugUGCUGGGUCGGGccUCUg -3'
miRNA:   3'- -CGU----GGUCGUggACGACCCGGUCU--AGA- -5'
29020 3' -58.4 NC_006146.1 + 90809 0.66 0.815767
Target:  5'- aGCACCcaguucgccacccaGGCGCUgUGCUGGGaCCgcguucgAGAUCa -3'
miRNA:   3'- -CGUGG--------------UCGUGG-ACGACCC-GG-------UCUAGa -5'
29020 3' -58.4 NC_006146.1 + 94616 0.71 0.527029
Target:  5'- cGCGuCCAGC-CCacguaCUGGGCCGGGUCc -3'
miRNA:   3'- -CGU-GGUCGuGGac---GACCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 98435 0.67 0.764455
Target:  5'- aGCGCCcagaaccgguuucGGCGCC-GCccggGGGCCAGucUCUg -3'
miRNA:   3'- -CGUGG-------------UCGUGGaCGa---CCCGGUCu-AGA- -5'
29020 3' -58.4 NC_006146.1 + 100747 0.66 0.78388
Target:  5'- cCACCAGCGCCccgGCcaGGaGCCAGGc-- -3'
miRNA:   3'- cGUGGUCGUGGa--CGa-CC-CGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 104212 0.66 0.819187
Target:  5'- uGCAUCuGCACggggaaGCUGGGCUuccGGGUCa -3'
miRNA:   3'- -CGUGGuCGUGga----CGACCCGG---UCUAGa -5'
29020 3' -58.4 NC_006146.1 + 104673 0.71 0.550613
Target:  5'- -uGCCuGCGCCgcgauagaggggcaGCUGGGCCuGGAUCUc -3'
miRNA:   3'- cgUGGuCGUGGa-------------CGACCCGG-UCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 106635 0.76 0.292718
Target:  5'- uGC-CgCAGCGCCUGCUGcGGCCGGcugGUCa -3'
miRNA:   3'- -CGuG-GUCGUGGACGAC-CCGGUC---UAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.