miRNA display CGI


Results 41 - 60 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 108292 0.66 0.802717
Target:  5'- cGCAgCAGCucccgcucauuGCCUGCggcggacgccauuucGGGCCAGAa-- -3'
miRNA:   3'- -CGUgGUCG-----------UGGACGa--------------CCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 114240 0.73 0.416112
Target:  5'- gGC-CCGGCACCUcagGgaGGGCCAGcUCg -3'
miRNA:   3'- -CGuGGUCGUGGA---CgaCCCGGUCuAGa -5'
29020 3' -58.4 NC_006146.1 + 116888 0.68 0.677485
Target:  5'- cGCAgCAGUGCCUGCUccaGGGCU--AUCa -3'
miRNA:   3'- -CGUgGUCGUGGACGA---CCCGGucUAGa -5'
29020 3' -58.4 NC_006146.1 + 119250 0.67 0.74644
Target:  5'- gGCACCGGC-CCUGgccccCUGGGaguCCAGAg-- -3'
miRNA:   3'- -CGUGGUCGuGGAC-----GACCC---GGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 120214 0.68 0.70743
Target:  5'- -uGCCGGUcgguGCCUGUgGGGCCGGGg-- -3'
miRNA:   3'- cgUGGUCG----UGGACGaCCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 120963 0.67 0.736812
Target:  5'- -aACCGucacgaguGCGCgCUGCUGGGCCAcaGGUUa -3'
miRNA:   3'- cgUGGU--------CGUG-GACGACCCGGU--CUAGa -5'
29020 3' -58.4 NC_006146.1 + 122141 0.71 0.507668
Target:  5'- aGCugCGGCGgCUGCUGGagGCCGGGc-- -3'
miRNA:   3'- -CGugGUCGUgGACGACC--CGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 122591 0.66 0.81059
Target:  5'- cCGCCAGCACCuccgacggUGgaGGGCgAGGg-- -3'
miRNA:   3'- cGUGGUCGUGG--------ACgaCCCGgUCUaga -5'
29020 3' -58.4 NC_006146.1 + 125150 0.73 0.410942
Target:  5'- --cCCAGUAUCUGUuuaacgugaagacucUGGGCCAGGUCa -3'
miRNA:   3'- cguGGUCGUGGACG---------------ACCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 125295 0.67 0.755969
Target:  5'- -gGCCAGCACuCUGaaGGGCguGGUa- -3'
miRNA:   3'- cgUGGUCGUG-GACgaCCCGguCUAga -5'
29020 3' -58.4 NC_006146.1 + 126017 0.66 0.81059
Target:  5'- gGCGgUGGgcuuCugCUGCUGGGCCGGGa-- -3'
miRNA:   3'- -CGUgGUC----GugGACGACCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 128041 0.67 0.727095
Target:  5'- cCACCAGUggaACCUGCgcgUGGGCCuGGc-- -3'
miRNA:   3'- cGUGGUCG---UGGACG---ACCCGGuCUaga -5'
29020 3' -58.4 NC_006146.1 + 128194 0.66 0.827617
Target:  5'- -gGCCcaggggGGCGCCgcgGCgccGGGCCAGAcgcUCUu -3'
miRNA:   3'- cgUGG------UCGUGGa--CGa--CCCGGUCU---AGA- -5'
29020 3' -58.4 NC_006146.1 + 129552 0.69 0.647211
Target:  5'- cCACCAcCGCCagGCccUGGGCCAGAUa- -3'
miRNA:   3'- cGUGGUcGUGGa-CG--ACCCGGUCUAga -5'
29020 3' -58.4 NC_006146.1 + 131132 0.68 0.697499
Target:  5'- -aGCCAGCACCUGCcGcGUCugcGAUCUg -3'
miRNA:   3'- cgUGGUCGUGGACGaCcCGGu--CUAGA- -5'
29020 3' -58.4 NC_006146.1 + 141892 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 142678 0.68 0.70743
Target:  5'- cCACCuGCccuCCgGCUGGGUCGGAcggUCUg -3'
miRNA:   3'- cGUGGuCGu--GGaCGACCCGGUCU---AGA- -5'
29020 3' -58.4 NC_006146.1 + 142869 0.68 0.70743
Target:  5'- cCACCuGCccuCCgGCUGGGUCGGAcggUCUg -3'
miRNA:   3'- cGUGGuCGu--GGaCGACCCGGUCU---AGA- -5'
29020 3' -58.4 NC_006146.1 + 144970 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 146055 0.67 0.727095
Target:  5'- aGCugCAGCACCUGCuuguUGGugacCCGGAc-- -3'
miRNA:   3'- -CGugGUCGUGGACG----ACCc---GGUCUaga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.