miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 170201 0.71 0.536812
Target:  5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3'
miRNA:   3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 170102 0.66 0.801834
Target:  5'- -gGCCGGCGCCgcagGggGGGCCGGcggggcgucccGUCg -3'
miRNA:   3'- cgUGGUCGUGGa---CgaCCCGGUC-----------UAGa -5'
29020 3' -58.4 NC_006146.1 + 169270 0.71 0.536812
Target:  5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3'
miRNA:   3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 169170 0.75 0.327965
Target:  5'- -gGCCGGCGCCUGCaggggGGGCCGGcggggcgucccGUCg -3'
miRNA:   3'- cgUGGUCGUGGACGa----CCCGGUC-----------UAGa -5'
29020 3' -58.4 NC_006146.1 + 168338 0.71 0.536812
Target:  5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3'
miRNA:   3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 168238 0.75 0.327965
Target:  5'- -gGCCGGCGCCUGCaggggGGGCCGGcggggcgucccGUCg -3'
miRNA:   3'- cgUGGUCGUGGACGa----CCCGGUC-----------UAGa -5'
29020 3' -58.4 NC_006146.1 + 168146 0.66 0.801834
Target:  5'- cGgGCUuGgGCCUGCgaGGGCCGGGUa- -3'
miRNA:   3'- -CgUGGuCgUGGACGa-CCCGGUCUAga -5'
29020 3' -58.4 NC_006146.1 + 167406 0.71 0.536812
Target:  5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3'
miRNA:   3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 167306 0.75 0.327965
Target:  5'- -gGCCGGCGCCUGCaggggGGGCCGGcggggcgucccGUCg -3'
miRNA:   3'- cgUGGUCGUGGACGa----CCCGGUC-----------UAGa -5'
29020 3' -58.4 NC_006146.1 + 164245 0.66 0.827617
Target:  5'- cCAUCAGUgggGCCUGgUGGGCCAccUCc -3'
miRNA:   3'- cGUGGUCG---UGGACgACCCGGUcuAGa -5'
29020 3' -58.4 NC_006146.1 + 164003 0.67 0.755021
Target:  5'- uGCACCAGaguuGCCUaauaggaGCuUGGGUCAGAUa- -3'
miRNA:   3'- -CGUGGUCg---UGGA-------CG-ACCCGGUCUAga -5'
29020 3' -58.4 NC_006146.1 + 162847 0.66 0.792928
Target:  5'- -uGCCAGaCACCccCaGGGCCGGGUCc -3'
miRNA:   3'- cgUGGUC-GUGGacGaCCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 162388 0.67 0.765392
Target:  5'- cGCGCCcGCGCCcgggaccccGgUGGGCCAGGa-- -3'
miRNA:   3'- -CGUGGuCGUGGa--------CgACCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 157282 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 156906 0.67 0.765392
Target:  5'- aGCACCAGCccgGCCgagGcCUGGGUggCGGcgCUg -3'
miRNA:   3'- -CGUGGUCG---UGGa--C-GACCCG--GUCuaGA- -5'
29020 3' -58.4 NC_006146.1 + 156287 0.66 0.78388
Target:  5'- cCACgCAGCGCCaGCaGGGCaCAGAg-- -3'
miRNA:   3'- cGUG-GUCGUGGaCGaCCCG-GUCUaga -5'
29020 3' -58.4 NC_006146.1 + 155468 0.66 0.81059
Target:  5'- uGCGCCAgGCAggaCUGCagccGGGCCAGccccUCUg -3'
miRNA:   3'- -CGUGGU-CGUg--GACGa---CCCGGUCu---AGA- -5'
29020 3' -58.4 NC_006146.1 + 155078 0.68 0.70743
Target:  5'- uCGCuCGGCucgaUGCcGGGCCAGAUCa -3'
miRNA:   3'- cGUG-GUCGugg-ACGaCCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 154667 0.7 0.603686
Target:  5'- uGCACCGugguggcggggggcGCugCUGCUGGGU--GGUCUg -3'
miRNA:   3'- -CGUGGU--------------CGugGACGACCCGguCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 154204 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.