miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 153300 0.74 0.382411
Target:  5'- uGCuCCAgGCACCagGCccGGGCCAGGUCg -3'
miRNA:   3'- -CGuGGU-CGUGGa-CGa-CCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 152467 0.66 0.827617
Target:  5'- uGCACCGGCugCUGCgacaucUGGcGCguGcgCc -3'
miRNA:   3'- -CGUGGUCGugGACG------ACC-CGguCuaGa -5'
29020 3' -58.4 NC_006146.1 + 151126 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 149979 0.68 0.70743
Target:  5'- -gGCCAGgGCCUGCaggucGGCCGGAcUCa -3'
miRNA:   3'- cgUGGUCgUGGACGac---CCGGUCU-AGa -5'
29020 3' -58.4 NC_006146.1 + 149112 0.68 0.697499
Target:  5'- cGCGcCCGGCAuCCcGCUGGGCUuAGAa-- -3'
miRNA:   3'- -CGU-GGUCGU-GGaCGACCCGG-UCUaga -5'
29020 3' -58.4 NC_006146.1 + 148048 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 147315 0.69 0.647211
Target:  5'- -aGCguGCACCUggaagacgcaGCUGGGgUAGAUCUu -3'
miRNA:   3'- cgUGguCGUGGA----------CGACCCgGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 147048 0.66 0.819187
Target:  5'- ---aCGGUACCacGCaaUGGGCCAGGUCc -3'
miRNA:   3'- cgugGUCGUGGa-CG--ACCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 146834 0.7 0.586551
Target:  5'- cGCGCCAGCguagagcccggGCCUgGCUcgGGGCCGcGUCa -3'
miRNA:   3'- -CGUGGUCG-----------UGGA-CGA--CCCGGUcUAGa -5'
29020 3' -58.4 NC_006146.1 + 146055 0.67 0.727095
Target:  5'- aGCugCAGCACCUGCuuguUGGugacCCGGAc-- -3'
miRNA:   3'- -CGugGUCGUGGACG----ACCc---GGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 144970 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 142869 0.68 0.70743
Target:  5'- cCACCuGCccuCCgGCUGGGUCGGAcggUCUg -3'
miRNA:   3'- cGUGGuCGu--GGaCGACCCGGUCU---AGA- -5'
29020 3' -58.4 NC_006146.1 + 142678 0.68 0.70743
Target:  5'- cCACCuGCccuCCgGCUGGGUCGGAcggUCUg -3'
miRNA:   3'- cGUGGuCGu--GGaCGACCCGGUCU---AGA- -5'
29020 3' -58.4 NC_006146.1 + 141892 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 131132 0.68 0.697499
Target:  5'- -aGCCAGCACCUGCcGcGUCugcGAUCUg -3'
miRNA:   3'- cgUGGUCGUGGACGaCcCGGu--CUAGA- -5'
29020 3' -58.4 NC_006146.1 + 129552 0.69 0.647211
Target:  5'- cCACCAcCGCCagGCccUGGGCCAGAUa- -3'
miRNA:   3'- cGUGGUcGUGGa-CG--ACCCGGUCUAga -5'
29020 3' -58.4 NC_006146.1 + 128194 0.66 0.827617
Target:  5'- -gGCCcaggggGGCGCCgcgGCgccGGGCCAGAcgcUCUu -3'
miRNA:   3'- cgUGG------UCGUGGa--CGa--CCCGGUCU---AGA- -5'
29020 3' -58.4 NC_006146.1 + 128041 0.67 0.727095
Target:  5'- cCACCAGUggaACCUGCgcgUGGGCCuGGc-- -3'
miRNA:   3'- cGUGGUCG---UGGACG---ACCCGGuCUaga -5'
29020 3' -58.4 NC_006146.1 + 126017 0.66 0.81059
Target:  5'- gGCGgUGGgcuuCugCUGCUGGGCCGGGa-- -3'
miRNA:   3'- -CGUgGUC----GugGACGACCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 125295 0.67 0.755969
Target:  5'- -gGCCAGCACuCUGaaGGGCguGGUa- -3'
miRNA:   3'- cgUGGUCGUG-GACgaCCCGguCUAga -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.