miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 56438 1.09 0.001657
Target:  5'- cGCACCAGCACCUGCUGGGCCAGAUCUc -3'
miRNA:   3'- -CGUGGUCGUGGACGACCCGGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 85611 0.69 0.657325
Target:  5'- -aGCUGGCACCgggGCaaaGGGCCAGAg-- -3'
miRNA:   3'- cgUGGUCGUGGa--CGa--CCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 149112 0.68 0.697499
Target:  5'- cGCGcCCGGCAuCCcGCUGGGCUuAGAa-- -3'
miRNA:   3'- -CGU-GGUCGU-GGaCGACCCGG-UCUaga -5'
29020 3' -58.4 NC_006146.1 + 50688 0.66 0.827617
Target:  5'- gGCGucccuCCGGCAcuucCCUGUUaGaGGCCGGGUCa -3'
miRNA:   3'- -CGU-----GGUCGU----GGACGA-C-CCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 153300 0.74 0.382411
Target:  5'- uGCuCCAgGCACCagGCccGGGCCAGGUCg -3'
miRNA:   3'- -CGuGGU-CGUGGa-CGa-CCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 57990 0.73 0.416112
Target:  5'- cGCACCAGgACgaGCUGGaggcCCGGGUCUc -3'
miRNA:   3'- -CGUGGUCgUGgaCGACCc---GGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 94616 0.71 0.527029
Target:  5'- cGCGuCCAGC-CCacguaCUGGGCCGGGUCc -3'
miRNA:   3'- -CGU-GGUCGuGGac---GACCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 167406 0.71 0.536812
Target:  5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3'
miRNA:   3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 170201 0.71 0.536812
Target:  5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3'
miRNA:   3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 88261 0.69 0.647211
Target:  5'- gGCAaaauCCGGCGugUGCUGGGUCGGGccUCUg -3'
miRNA:   3'- -CGU----GGUCGUggACGACCCGGUCU--AGA- -5'
29020 3' -58.4 NC_006146.1 + 154667 0.7 0.603686
Target:  5'- uGCACCGugguggcggggggcGCugCUGCUGGGU--GGUCUg -3'
miRNA:   3'- -CGUGGU--------------CGugGACGACCCGguCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 169270 0.71 0.536812
Target:  5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3'
miRNA:   3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 167306 0.75 0.327965
Target:  5'- -gGCCGGCGCCUGCaggggGGGCCGGcggggcgucccGUCg -3'
miRNA:   3'- cgUGGUCGUGGACGa----CCCGGUC-----------UAGa -5'
29020 3' -58.4 NC_006146.1 + 59895 0.69 0.636072
Target:  5'- cGgGCCAGCacgcuggccaACCUGCUGGugcgcggcuacgaGCUGGGUCUg -3'
miRNA:   3'- -CgUGGUCG----------UGGACGACC-------------CGGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 168238 0.75 0.327965
Target:  5'- -gGCCGGCGCCUGCaggggGGGCCGGcggggcgucccGUCg -3'
miRNA:   3'- cgUGGUCGUGGACGa----CCCGGUC-----------UAGa -5'
29020 3' -58.4 NC_006146.1 + 168338 0.71 0.536812
Target:  5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3'
miRNA:   3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 147315 0.69 0.647211
Target:  5'- -aGCguGCACCUggaagacgcaGCUGGGgUAGAUCUu -3'
miRNA:   3'- cgUGguCGUGGA----------CGACCCgGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 116888 0.68 0.677485
Target:  5'- cGCAgCAGUGCCUGCUccaGGGCU--AUCa -3'
miRNA:   3'- -CGUgGUCGUGGACGA---CCCGGucUAGa -5'
29020 3' -58.4 NC_006146.1 + 169170 0.75 0.327965
Target:  5'- -gGCCGGCGCCUGCaggggGGGCCGGcggggcgucccGUCg -3'
miRNA:   3'- cgUGGUCGUGGACGa----CCCGGUC-----------UAGa -5'
29020 3' -58.4 NC_006146.1 + 114240 0.73 0.416112
Target:  5'- gGC-CCGGCACCUcagGgaGGGCCAGcUCg -3'
miRNA:   3'- -CGuGGUCGUGGA---CgaCCCGGUCuAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.