miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 46583 0.68 0.70743
Target:  5'- uGCGCCAGCagcgucaugGCCacgaugggGUUGucGGCCAGGUCUu -3'
miRNA:   3'- -CGUGGUCG---------UGGa-------CGAC--CCGGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 149979 0.68 0.70743
Target:  5'- -gGCCAGgGCCUGCaggucGGCCGGAcUCa -3'
miRNA:   3'- cgUGGUCgUGGACGac---CCGGUCU-AGa -5'
29020 3' -58.4 NC_006146.1 + 147315 0.69 0.647211
Target:  5'- -aGCguGCACCUggaagacgcaGCUGGGgUAGAUCUu -3'
miRNA:   3'- cgUGguCGUGGA----------CGACCCgGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 167406 0.71 0.536812
Target:  5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3'
miRNA:   3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 125295 0.67 0.755969
Target:  5'- -gGCCAGCACuCUGaaGGGCguGGUa- -3'
miRNA:   3'- cgUGGUCGUG-GACgaCCCGguCUAga -5'
29020 3' -58.4 NC_006146.1 + 146055 0.67 0.727095
Target:  5'- aGCugCAGCACCUGCuuguUGGugacCCGGAc-- -3'
miRNA:   3'- -CGugGUCGUGGACG----ACCc---GGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 149112 0.68 0.697499
Target:  5'- cGCGcCCGGCAuCCcGCUGGGCUuAGAa-- -3'
miRNA:   3'- -CGU-GGUCGU-GGaCGACCCGG-UCUaga -5'
29020 3' -58.4 NC_006146.1 + 94616 0.71 0.527029
Target:  5'- cGCGuCCAGC-CCacguaCUGGGCCGGGUCc -3'
miRNA:   3'- -CGU-GGUCGuGGac---GACCCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 128041 0.67 0.727095
Target:  5'- cCACCAGUggaACCUGCgcgUGGGCCuGGc-- -3'
miRNA:   3'- cGUGGUCG---UGGACG---ACCCGGuCUaga -5'
29020 3' -58.4 NC_006146.1 + 114240 0.73 0.416112
Target:  5'- gGC-CCGGCACCUcagGgaGGGCCAGcUCg -3'
miRNA:   3'- -CGuGGUCGUGGA---CgaCCCGGUCuAGa -5'
29020 3' -58.4 NC_006146.1 + 120214 0.68 0.70743
Target:  5'- -uGCCGGUcgguGCCUGUgGGGCCGGGg-- -3'
miRNA:   3'- cgUGGUCG----UGGACGaCCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 142678 0.68 0.70743
Target:  5'- cCACCuGCccuCCgGCUGGGUCGGAcggUCUg -3'
miRNA:   3'- cGUGGuCGu--GGaCGACCCGGUCU---AGA- -5'
29020 3' -58.4 NC_006146.1 + 116888 0.68 0.677485
Target:  5'- cGCAgCAGUGCCUGCUccaGGGCU--AUCa -3'
miRNA:   3'- -CGUgGUCGUGGACGA---CCCGGucUAGa -5'
29020 3' -58.4 NC_006146.1 + 88261 0.69 0.647211
Target:  5'- gGCAaaauCCGGCGugUGCUGGGUCGGGccUCUg -3'
miRNA:   3'- -CGU----GGUCGUggACGACCCGGUCU--AGA- -5'
29020 3' -58.4 NC_006146.1 + 146834 0.7 0.586551
Target:  5'- cGCGCCAGCguagagcccggGCCUgGCUcgGGGCCGcGUCa -3'
miRNA:   3'- -CGUGGUCG-----------UGGA-CGA--CCCGGUcUAGa -5'
29020 3' -58.4 NC_006146.1 + 168338 0.71 0.536812
Target:  5'- -gGCCGGgGCCUgGCggGGGCCAGcgCg -3'
miRNA:   3'- cgUGGUCgUGGA-CGa-CCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 42706 0.67 0.774698
Target:  5'- aGCcccCCAGCGCCcGCUcGGGCUggcagccgcGGAUCc -3'
miRNA:   3'- -CGu--GGUCGUGGaCGA-CCCGG---------UCUAGa -5'
29020 3' -58.4 NC_006146.1 + 98435 0.67 0.764455
Target:  5'- aGCGCCcagaaccgguuucGGCGCC-GCccggGGGCCAGucUCUg -3'
miRNA:   3'- -CGUGG-------------UCGUGGaCGa---CCCGGUCu-AGA- -5'
29020 3' -58.4 NC_006146.1 + 42822 0.67 0.74644
Target:  5'- gGCcCCucccGCACCUGCaUGaGGCCGGugGUCUu -3'
miRNA:   3'- -CGuGGu---CGUGGACG-AC-CCGGUC--UAGA- -5'
29020 3' -58.4 NC_006146.1 + 61814 0.67 0.727095
Target:  5'- cGCGCCGGCACg-GCacGGGCgGGGUg- -3'
miRNA:   3'- -CGUGGUCGUGgaCGa-CCCGgUCUAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.