miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 146055 0.67 0.727095
Target:  5'- aGCugCAGCACCUGCuuguUGGugacCCGGAc-- -3'
miRNA:   3'- -CGugGUCGUGGACG----ACCc---GGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 155468 0.66 0.81059
Target:  5'- uGCGCCAgGCAggaCUGCagccGGGCCAGccccUCUg -3'
miRNA:   3'- -CGUGGU-CGUg--GACGa---CCCGGUCu---AGA- -5'
29020 3' -58.4 NC_006146.1 + 128041 0.67 0.727095
Target:  5'- cCACCAGUggaACCUGCgcgUGGGCCuGGc-- -3'
miRNA:   3'- cGUGGUCG---UGGACG---ACCCGGuCUaga -5'
29020 3' -58.4 NC_006146.1 + 119250 0.67 0.74644
Target:  5'- gGCACCGGC-CCUGgccccCUGGGaguCCAGAg-- -3'
miRNA:   3'- -CGUGGUCGuGGAC-----GACCC---GGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 156906 0.67 0.765392
Target:  5'- aGCACCAGCccgGCCgagGcCUGGGUggCGGcgCUg -3'
miRNA:   3'- -CGUGGUCG---UGGa--C-GACCCG--GUCuaGA- -5'
29020 3' -58.4 NC_006146.1 + 50688 0.66 0.827617
Target:  5'- gGCGucccuCCGGCAcuucCCUGUUaGaGGCCGGGUCa -3'
miRNA:   3'- -CGU-----GGUCGU----GGACGA-C-CCGGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 128194 0.66 0.827617
Target:  5'- -gGCCcaggggGGCGCCgcgGCgccGGGCCAGAcgcUCUu -3'
miRNA:   3'- cgUGG------UCGUGGa--CGa--CCCGGUCU---AGA- -5'
29020 3' -58.4 NC_006146.1 + 126017 0.66 0.81059
Target:  5'- gGCGgUGGgcuuCugCUGCUGGGCCGGGa-- -3'
miRNA:   3'- -CGUgGUC----GugGACGACCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 59451 0.66 0.81059
Target:  5'- uCACUGGCACga-CUGGGCCGGAa-- -3'
miRNA:   3'- cGUGGUCGUGgacGACCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 170102 0.66 0.801834
Target:  5'- -gGCCGGCGCCgcagGggGGGCCGGcggggcgucccGUCg -3'
miRNA:   3'- cgUGGUCGUGGa---CgaCCCGGUC-----------UAGa -5'
29020 3' -58.4 NC_006146.1 + 56492 0.66 0.792928
Target:  5'- gGCAUCAGCGCgCgcaGUcGGGCCgcgGGGUCg -3'
miRNA:   3'- -CGUGGUCGUG-Ga--CGaCCCGG---UCUAGa -5'
29020 3' -58.4 NC_006146.1 + 42706 0.67 0.774698
Target:  5'- aGCcccCCAGCGCCcGCUcGGGCUggcagccgcGGAUCc -3'
miRNA:   3'- -CGu--GGUCGUGGaCGA-CCCGG---------UCUAGa -5'
29020 3' -58.4 NC_006146.1 + 152467 0.66 0.827617
Target:  5'- uGCACCGGCugCUGCgacaucUGGcGCguGcgCc -3'
miRNA:   3'- -CGUGGUCGugGACG------ACC-CGguCuaGa -5'
29020 3' -58.4 NC_006146.1 + 52804 0.71 0.530934
Target:  5'- uGCGCCAGCuCCUGaccuucCUGGGugaagaggcugacaaCCAGAUCa -3'
miRNA:   3'- -CGUGGUCGuGGAC------GACCC---------------GGUCUAGa -5'
29020 3' -58.4 NC_006146.1 + 104673 0.71 0.550613
Target:  5'- -uGCCuGCGCCgcgauagaggggcaGCUGGGCCuGGAUCUc -3'
miRNA:   3'- cgUGGuCGUGGa-------------CGACCCGG-UCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 61598 0.71 0.507668
Target:  5'- gGCugCAGCgGCCgcgGCcgGGGCCgAGAUCc -3'
miRNA:   3'- -CGugGUCG-UGGa--CGa-CCCGG-UCUAGa -5'
29020 3' -58.4 NC_006146.1 + 141892 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 66088 0.72 0.469906
Target:  5'- uCACCugcgAGUAUCUGUUGGGCCGGGggagCUa -3'
miRNA:   3'- cGUGG----UCGUGGACGACCCGGUCUa---GA- -5'
29020 3' -58.4 NC_006146.1 + 100747 0.66 0.78388
Target:  5'- cCACCAGCGCCccgGCcaGGaGCCAGGc-- -3'
miRNA:   3'- cGUGGUCGUGGa--CGa-CC-CGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 14053 0.67 0.774698
Target:  5'- gGCGCaAGCGCCggcugGCUGcGGuccucCCGGGUCUg -3'
miRNA:   3'- -CGUGgUCGUGGa----CGAC-CC-----GGUCUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.