Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29020 | 3' | -58.4 | NC_006146.1 | + | 154204 | 0.66 | 0.819187 |
Target: 5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3' miRNA: 3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 144970 | 0.66 | 0.819187 |
Target: 5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3' miRNA: 3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 148048 | 0.66 | 0.819187 |
Target: 5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3' miRNA: 3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 141892 | 0.66 | 0.819187 |
Target: 5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3' miRNA: 3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 40991 | 0.67 | 0.727095 |
Target: 5'- cGCGCCGGCGCCcca-GGGCgCAGAg-- -3' miRNA: 3'- -CGUGGUCGUGGacgaCCCG-GUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 20123 | 0.75 | 0.335381 |
Target: 5'- gGC-CCGGCACCUGCUggGGGCCAa---- -3' miRNA: 3'- -CGuGGUCGUGGACGA--CCCGGUcuaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 54027 | 0.73 | 0.407517 |
Target: 5'- gGCACUgcuGCGCCUgGCcGGGCCGGAUg- -3' miRNA: 3'- -CGUGGu--CGUGGA-CGaCCCGGUCUAga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 122141 | 0.71 | 0.507668 |
Target: 5'- aGCugCGGCGgCUGCUGGagGCCGGGc-- -3' miRNA: 3'- -CGugGUCGUgGACGACC--CGGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 66088 | 0.72 | 0.469906 |
Target: 5'- uCACCugcgAGUAUCUGUUGGGCCGGGggagCUa -3' miRNA: 3'- cGUGG----UCGUGGACGACCCGGUCUa---GA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 61598 | 0.71 | 0.507668 |
Target: 5'- gGCugCAGCgGCCgcgGCcgGGGCCgAGAUCc -3' miRNA: 3'- -CGugGUCG-UGGa--CGa-CCCGG-UCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 52804 | 0.71 | 0.530934 |
Target: 5'- uGCGCCAGCuCCUGaccuucCUGGGugaagaggcugacaaCCAGAUCa -3' miRNA: 3'- -CGUGGUCGuGGAC------GACCC---------------GGUCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 104673 | 0.71 | 0.550613 |
Target: 5'- -uGCCuGCGCCgcgauagaggggcaGCUGGGCCuGGAUCUc -3' miRNA: 3'- cgUGGuCGUGGa-------------CGACCCGG-UCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 74873 | 0.7 | 0.556561 |
Target: 5'- -gGCCGGCACCaUGCcgGuGGCaCAGAUCc -3' miRNA: 3'- cgUGGUCGUGG-ACGa-C-CCG-GUCUAGa -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 24881 | 0.7 | 0.610761 |
Target: 5'- aGUGCCAGgAgCUGCcccccugccccucggUGGGCCAGAUa- -3' miRNA: 3'- -CGUGGUCgUgGACG---------------ACCCGGUCUAga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 71450 | 0.69 | 0.626956 |
Target: 5'- gGCACCuGGCGCCgaggaGCgaGGGCCucaugcuccuGGAUCUg -3' miRNA: 3'- -CGUGG-UCGUGGa----CGa-CCCGG----------UCUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 129552 | 0.69 | 0.647211 |
Target: 5'- cCACCAcCGCCagGCccUGGGCCAGAUa- -3' miRNA: 3'- cGUGGUcGUGGa-CG--ACCCGGUCUAga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 18962 | 0.68 | 0.677485 |
Target: 5'- uGCGCCAGCGgccCCUagagagggcgGCaGGGCCGGAg-- -3' miRNA: 3'- -CGUGGUCGU---GGA----------CGaCCCGGUCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 131132 | 0.68 | 0.697499 |
Target: 5'- -aGCCAGCACCUGCcGcGUCugcGAUCUg -3' miRNA: 3'- cgUGGUCGUGGACGaCcCGGu--CUAGA- -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 41726 | 0.68 | 0.70743 |
Target: 5'- aGUACUGGUACCUGCUcuaccGGGCCcugAGAc-- -3' miRNA: 3'- -CGUGGUCGUGGACGA-----CCCGG---UCUaga -5' |
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29020 | 3' | -58.4 | NC_006146.1 | + | 12611 | 0.68 | 0.716314 |
Target: 5'- uGCAUguGCuacgagaaugacaACCcgggGCUGGGCCAGAg-- -3' miRNA: 3'- -CGUGguCG-------------UGGa---CGACCCGGUCUaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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