miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 3' -58.4 NC_006146.1 + 131132 0.68 0.697499
Target:  5'- -aGCCAGCACCUGCcGcGUCugcGAUCUg -3'
miRNA:   3'- cgUGGUCGUGGACGaCcCGGu--CUAGA- -5'
29020 3' -58.4 NC_006146.1 + 64215 0.66 0.792928
Target:  5'- aGCuCCGGCAggaggcacaUCUGCgccUGGGCCGGggCg -3'
miRNA:   3'- -CGuGGUCGU---------GGACG---ACCCGGUCuaGa -5'
29020 3' -58.4 NC_006146.1 + 100747 0.66 0.78388
Target:  5'- cCACCAGCGCCccgGCcaGGaGCCAGGc-- -3'
miRNA:   3'- cGUGGUCGUGGa--CGa-CC-CGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 14053 0.67 0.774698
Target:  5'- gGCGCaAGCGCCggcugGCUGcGGuccucCCGGGUCUg -3'
miRNA:   3'- -CGUGgUCGUGGa----CGAC-CC-----GGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 19403 0.67 0.765392
Target:  5'- gGCugCAGgACaaGCacgGGuGCCAGAUCUu -3'
miRNA:   3'- -CGugGUCgUGgaCGa--CC-CGGUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 13557 0.67 0.74644
Target:  5'- gGCGCCgGGCGCCggGCUGcgcaagcaGGCCGGGg-- -3'
miRNA:   3'- -CGUGG-UCGUGGa-CGAC--------CCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 40991 0.67 0.727095
Target:  5'- cGCGCCGGCGCCcca-GGGCgCAGAg-- -3'
miRNA:   3'- -CGUGGUCGUGGacgaCCCG-GUCUaga -5'
29020 3' -58.4 NC_006146.1 + 12611 0.68 0.716314
Target:  5'- uGCAUguGCuacgagaaugacaACCcgggGCUGGGCCAGAg-- -3'
miRNA:   3'- -CGUGguCG-------------UGGa---CGACCCGGUCUaga -5'
29020 3' -58.4 NC_006146.1 + 41726 0.68 0.70743
Target:  5'- aGUACUGGUACCUGCUcuaccGGGCCcugAGAc-- -3'
miRNA:   3'- -CGUGGUCGUGGACGA-----CCCGG---UCUaga -5'
29020 3' -58.4 NC_006146.1 + 72504 0.66 0.801834
Target:  5'- gGCugCAGCGCCUGCgGaGGagCGGAcggCUg -3'
miRNA:   3'- -CGugGUCGUGGACGaC-CCg-GUCUa--GA- -5'
29020 3' -58.4 NC_006146.1 + 168146 0.66 0.801834
Target:  5'- cGgGCUuGgGCCUGCgaGGGCCGGGUa- -3'
miRNA:   3'- -CgUGGuCgUGGACGa-CCCGGUCUAga -5'
29020 3' -58.4 NC_006146.1 + 122591 0.66 0.81059
Target:  5'- cCGCCAGCACCuccgacggUGgaGGGCgAGGg-- -3'
miRNA:   3'- cGUGGUCGUGG--------ACgaCCCGgUCUaga -5'
29020 3' -58.4 NC_006146.1 + 157282 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 154204 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 151126 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 148048 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 144970 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 141892 0.66 0.819187
Target:  5'- -gACCAGgGCCUcCUGGGCgucucUGGGUCUg -3'
miRNA:   3'- cgUGGUCgUGGAcGACCCG-----GUCUAGA- -5'
29020 3' -58.4 NC_006146.1 + 104212 0.66 0.819187
Target:  5'- uGCAUCuGCACggggaaGCUGGGCUuccGGGUCa -3'
miRNA:   3'- -CGUGGuCGUGga----CGACCCGG---UCUAGa -5'
29020 3' -58.4 NC_006146.1 + 90809 0.66 0.815767
Target:  5'- aGCACCcaguucgccacccaGGCGCUgUGCUGGGaCCgcguucgAGAUCa -3'
miRNA:   3'- -CGUGG--------------UCGUGG-ACGACCC-GG-------UCUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.