Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 115169 | 0.68 | 0.792335 |
Target: 5'- uGGAGAUCUUgGGCguguacgcggaggCCAGCGGCGggCAg -3' miRNA: 3'- -CUUCUAGGGgUCGa------------GGUCGCCGUa-GU- -5' |
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29020 | 5' | -56.9 | NC_006146.1 | + | 53332 | 0.68 | 0.777621 |
Target: 5'- cGAGGAggCCCGGCggCCgcggGGCGGCGUgAg -3' miRNA: 3'- -CUUCUagGGGUCGa-GG----UCGCCGUAgU- -5' |
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29020 | 5' | -56.9 | NC_006146.1 | + | 61589 | 0.69 | 0.709822 |
Target: 5'- gGAAGAg--CCGGCUgCAGCGGCcgCGg -3' miRNA: 3'- -CUUCUaggGGUCGAgGUCGCCGuaGU- -5' |
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29020 | 5' | -56.9 | NC_006146.1 | + | 137594 | 0.69 | 0.739459 |
Target: 5'- -cGGAgCCCCAGgaCCgAGCGGCGgcgCAg -3' miRNA: 3'- cuUCUaGGGGUCgaGG-UCGCCGUa--GU- -5' |
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29020 | 5' | -56.9 | NC_006146.1 | + | 137472 | 0.69 | 0.739459 |
Target: 5'- -cGGAgCCCCAGgaCCgAGCGGCGgcgCAg -3' miRNA: 3'- cuUCUaGGGGUCgaGG-UCGCCGUa--GU- -5' |
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29020 | 5' | -56.9 | NC_006146.1 | + | 123935 | 0.7 | 0.669423 |
Target: 5'- uGAAcGGUCCCCucAGCUCCGGCaGGUccuUCGu -3' miRNA: 3'- -CUU-CUAGGGG--UCGAGGUCG-CCGu--AGU- -5' |
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29020 | 5' | -56.9 | NC_006146.1 | + | 69707 | 0.7 | 0.669423 |
Target: 5'- -uGGAUCUUCAGCUCCgAGgGGCG-CAg -3' miRNA: 3'- cuUCUAGGGGUCGAGG-UCgCCGUaGU- -5' |
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29020 | 5' | -56.9 | NC_006146.1 | + | 55748 | 0.7 | 0.649007 |
Target: 5'- cAAGAUCUCCAccGC-CCGGCGGCGg-- -3' miRNA: 3'- cUUCUAGGGGU--CGaGGUCGCCGUagu -5' |
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29020 | 5' | -56.9 | NC_006146.1 | + | 53790 | 0.71 | 0.628536 |
Target: 5'- cGAGGG-CCUCGGC-CCGcGCGGCGUCc -3' miRNA: 3'- -CUUCUaGGGGUCGaGGU-CGCCGUAGu -5' |
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29020 | 5' | -56.9 | NC_006146.1 | + | 129387 | 0.71 | 0.608076 |
Target: 5'- -cGGAUCCCgGGCgUCAGCcgGGCGUCGu -3' miRNA: 3'- cuUCUAGGGgUCGaGGUCG--CCGUAGU- -5' |
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29020 | 5' | -56.9 | NC_006146.1 | + | 39665 | 0.71 | 0.608076 |
Target: 5'- uGGAGAUCCa-GGCUCUGGgGGCGUUg -3' miRNA: 3'- -CUUCUAGGggUCGAGGUCgCCGUAGu -5' |
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29020 | 5' | -56.9 | NC_006146.1 | + | 137895 | 0.72 | 0.571468 |
Target: 5'- aGggGGUCCCCguggacagggccgggGGUUCCGGgGGCAg-- -3' miRNA: 3'- -CuuCUAGGGG---------------UCGAGGUCgCCGUagu -5' |
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29020 | 5' | -56.9 | NC_006146.1 | + | 123469 | 0.73 | 0.49826 |
Target: 5'- -cAGGUgCCCCAGCUCCuccauccuaacGGUGGuCAUCAg -3' miRNA: 3'- cuUCUA-GGGGUCGAGG-----------UCGCC-GUAGU- -5' |
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29020 | 5' | -56.9 | NC_006146.1 | + | 56472 | 1.09 | 0.002358 |
Target: 5'- cGAAGAUCCCCAGCUCCAGCGGCAUCAg -3' miRNA: 3'- -CUUCUAGGGGUCGAGGUCGCCGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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