miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 5' -56.9 NC_006146.1 + 10839 0.66 0.870209
Target:  5'- -cAGGUgCCUGacugugccGCUCCucuGCGGCAUCAc -3'
miRNA:   3'- cuUCUAgGGGU--------CGAGGu--CGCCGUAGU- -5'
29020 5' -56.9 NC_006146.1 + 17792 0.68 0.786859
Target:  5'- uGAGGGUCCCgGGCUCCgAGa-GCAUg- -3'
miRNA:   3'- -CUUCUAGGGgUCGAGG-UCgcCGUAgu -5'
29020 5' -56.9 NC_006146.1 + 39665 0.71 0.608076
Target:  5'- uGGAGAUCCa-GGCUCUGGgGGCGUUg -3'
miRNA:   3'- -CUUCUAGGggUCGAGGUCgCCGUAGu -5'
29020 5' -56.9 NC_006146.1 + 43493 0.67 0.82233
Target:  5'- --uGAca-CCGGCUCCGGCGGCGg-- -3'
miRNA:   3'- cuuCUaggGGUCGAGGUCGCCGUagu -5'
29020 5' -56.9 NC_006146.1 + 53332 0.68 0.777621
Target:  5'- cGAGGAggCCCGGCggCCgcggGGCGGCGUgAg -3'
miRNA:   3'- -CUUCUagGGGUCGa-GG----UCGCCGUAgU- -5'
29020 5' -56.9 NC_006146.1 + 53790 0.71 0.628536
Target:  5'- cGAGGG-CCUCGGC-CCGcGCGGCGUCc -3'
miRNA:   3'- -CUUCUaGGGGUCGaGGU-CGCCGUAGu -5'
29020 5' -56.9 NC_006146.1 + 55748 0.7 0.649007
Target:  5'- cAAGAUCUCCAccGC-CCGGCGGCGg-- -3'
miRNA:   3'- cUUCUAGGGGU--CGaGGUCGCCGUagu -5'
29020 5' -56.9 NC_006146.1 + 56472 1.09 0.002358
Target:  5'- cGAAGAUCCCCAGCUCCAGCGGCAUCAg -3'
miRNA:   3'- -CUUCUAGGGGUCGAGGUCGCCGUAGU- -5'
29020 5' -56.9 NC_006146.1 + 59788 0.66 0.862727
Target:  5'- uGAGGGUgucgaCCCggcagAGCUCCAGCugauugagGGCGUCGu -3'
miRNA:   3'- -CUUCUAg----GGG-----UCGAGGUCG--------CCGUAGU- -5'
29020 5' -56.9 NC_006146.1 + 61589 0.69 0.709822
Target:  5'- gGAAGAg--CCGGCUgCAGCGGCcgCGg -3'
miRNA:   3'- -CUUCUaggGGUCGAgGUCGCCGuaGU- -5'
29020 5' -56.9 NC_006146.1 + 66858 0.67 0.813701
Target:  5'- -uAGAucUCCCCAGCgUCCAG-GGCGc-- -3'
miRNA:   3'- cuUCU--AGGGGUCG-AGGUCgCCGUagu -5'
29020 5' -56.9 NC_006146.1 + 69707 0.7 0.669423
Target:  5'- -uGGAUCUUCAGCUCCgAGgGGCG-CAg -3'
miRNA:   3'- cuUCUAGGGGUCGAGG-UCgCCGUaGU- -5'
29020 5' -56.9 NC_006146.1 + 73169 0.67 0.82233
Target:  5'- uGAGGcgCCCCAGCaCCuccCGGCAUa- -3'
miRNA:   3'- -CUUCuaGGGGUCGaGGuc-GCCGUAgu -5'
29020 5' -56.9 NC_006146.1 + 84871 0.68 0.795957
Target:  5'- cGGAGA-CagCGGCUCCAGUGGCAg-- -3'
miRNA:   3'- -CUUCUaGggGUCGAGGUCGCCGUagu -5'
29020 5' -56.9 NC_006146.1 + 92491 0.67 0.804907
Target:  5'- gGGAGGUCCagaagGGC-CCAGCGGCuccuAUCAg -3'
miRNA:   3'- -CUUCUAGGgg---UCGaGGUCGCCG----UAGU- -5'
29020 5' -56.9 NC_006146.1 + 93957 0.67 0.830785
Target:  5'- ---cGUCCCaGGCgaccUCCAGCGGCAguUCAc -3'
miRNA:   3'- cuucUAGGGgUCG----AGGUCGCCGU--AGU- -5'
29020 5' -56.9 NC_006146.1 + 99077 0.68 0.786859
Target:  5'- --uGGUCUCCGGCUCuacauCAGUGGCAa-- -3'
miRNA:   3'- cuuCUAGGGGUCGAG-----GUCGCCGUagu -5'
29020 5' -56.9 NC_006146.1 + 102375 0.67 0.82233
Target:  5'- aAAGGUCUCCGGgUCCucggggagcuGGUGGUAUCu -3'
miRNA:   3'- cUUCUAGGGGUCgAGG----------UCGCCGUAGu -5'
29020 5' -56.9 NC_006146.1 + 102546 0.66 0.877476
Target:  5'- cGggGAUCUCCacagaGGCgUCCAGCaGCAg-- -3'
miRNA:   3'- -CuuCUAGGGG-----UCG-AGGUCGcCGUagu -5'
29020 5' -56.9 NC_006146.1 + 105825 0.68 0.786859
Target:  5'- aGGGGUCCCCGGCcgacaUCCGGaGGCGc-- -3'
miRNA:   3'- cUUCUAGGGGUCG-----AGGUCgCCGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.