Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 169564 | 0.67 | 0.804907 |
Target: 5'- gGggGGcuUCCCCGGggCCcgAGCGcGCGUCGg -3' miRNA: 3'- -CuuCU--AGGGGUCgaGG--UCGC-CGUAGU- -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 168632 | 0.67 | 0.804907 |
Target: 5'- gGggGGcuUCCCCGGggCCcgAGCGcGCGUCGg -3' miRNA: 3'- -CuuCU--AGGGGUCgaGG--UCGC-CGUAGU- -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 167971 | 0.66 | 0.884525 |
Target: 5'- uGAuGAcUCCCAGCUCCccgguaaacauGGUGGgCGUCAg -3' miRNA: 3'- -CUuCUaGGGGUCGAGG-----------UCGCC-GUAGU- -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 167699 | 0.67 | 0.804907 |
Target: 5'- gGggGGcuUCCCCGGggCCcgAGCGcGCGUCGg -3' miRNA: 3'- -CuuCU--AGGGGUCgaGG--UCGC-CGUAGU- -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 153323 | 0.67 | 0.82233 |
Target: 5'- -cAGGUCgCCCAGCauccgauugaUCUGGCGGCG-CAg -3' miRNA: 3'- cuUCUAG-GGGUCG----------AGGUCGCCGUaGU- -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 137895 | 0.72 | 0.571468 |
Target: 5'- aGggGGUCCCCguggacagggccgggGGUUCCGGgGGCAg-- -3' miRNA: 3'- -CuuCUAGGGG---------------UCGAGGUCgCCGUagu -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 137594 | 0.69 | 0.739459 |
Target: 5'- -cGGAgCCCCAGgaCCgAGCGGCGgcgCAg -3' miRNA: 3'- cuUCUaGGGGUCgaGG-UCGCCGUa--GU- -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 137472 | 0.69 | 0.739459 |
Target: 5'- -cGGAgCCCCAGgaCCgAGCGGCGgcgCAg -3' miRNA: 3'- cuUCUaGGGGUCgaGG-UCGCCGUa--GU- -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 129387 | 0.71 | 0.608076 |
Target: 5'- -cGGAUCCCgGGCgUCAGCcgGGCGUCGu -3' miRNA: 3'- cuUCUAGGGgUCGaGGUCG--CCGUAGU- -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 123935 | 0.7 | 0.669423 |
Target: 5'- uGAAcGGUCCCCucAGCUCCGGCaGGUccuUCGu -3' miRNA: 3'- -CUU-CUAGGGG--UCGAGGUCG-CCGu--AGU- -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 123469 | 0.73 | 0.49826 |
Target: 5'- -cAGGUgCCCCAGCUCCuccauccuaacGGUGGuCAUCAg -3' miRNA: 3'- cuUCUA-GGGGUCGAGG-----------UCGCC-GUAGU- -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 119827 | 0.68 | 0.768254 |
Target: 5'- ---cAUCCCCAcuGCcuucugUCCAGCGGCAgUCAu -3' miRNA: 3'- cuucUAGGGGU--CG------AGGUCGCCGU-AGU- -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 118451 | 0.66 | 0.877476 |
Target: 5'- uGAGG-CCCCu-CUCCAG-GGCGUCGa -3' miRNA: 3'- cUUCUaGGGGucGAGGUCgCCGUAGU- -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 115169 | 0.68 | 0.792335 |
Target: 5'- uGGAGAUCUUgGGCguguacgcggaggCCAGCGGCGggCAg -3' miRNA: 3'- -CUUCUAGGGgUCGa------------GGUCGCCGUa-GU- -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 105825 | 0.68 | 0.786859 |
Target: 5'- aGGGGUCCCCGGCcgacaUCCGGaGGCGc-- -3' miRNA: 3'- cUUCUAGGGGUCG-----AGGUCgCCGUagu -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 102546 | 0.66 | 0.877476 |
Target: 5'- cGggGAUCUCCacagaGGCgUCCAGCaGCAg-- -3' miRNA: 3'- -CuuCUAGGGG-----UCG-AGGUCGcCGUagu -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 102375 | 0.67 | 0.82233 |
Target: 5'- aAAGGUCUCCGGgUCCucggggagcuGGUGGUAUCu -3' miRNA: 3'- cUUCUAGGGGUCgAGG----------UCGCCGUAGu -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 99077 | 0.68 | 0.786859 |
Target: 5'- --uGGUCUCCGGCUCuacauCAGUGGCAa-- -3' miRNA: 3'- cuuCUAGGGGUCGAG-----GUCGCCGUagu -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 93957 | 0.67 | 0.830785 |
Target: 5'- ---cGUCCCaGGCgaccUCCAGCGGCAguUCAc -3' miRNA: 3'- cuucUAGGGgUCG----AGGUCGCCGU--AGU- -5' |
|||||||
29020 | 5' | -56.9 | NC_006146.1 | + | 92491 | 0.67 | 0.804907 |
Target: 5'- gGGAGGUCCagaagGGC-CCAGCGGCuccuAUCAg -3' miRNA: 3'- -CUUCUAGGgg---UCGaGGUCGCCG----UAGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home