miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 5' -56.9 NC_006146.1 + 69707 0.7 0.669423
Target:  5'- -uGGAUCUUCAGCUCCgAGgGGCG-CAg -3'
miRNA:   3'- cuUCUAGGGGUCGAGG-UCgCCGUaGU- -5'
29020 5' -56.9 NC_006146.1 + 93957 0.67 0.830785
Target:  5'- ---cGUCCCaGGCgaccUCCAGCGGCAguUCAc -3'
miRNA:   3'- cuucUAGGGgUCG----AGGUCGCCGU--AGU- -5'
29020 5' -56.9 NC_006146.1 + 118451 0.66 0.877476
Target:  5'- uGAGG-CCCCu-CUCCAG-GGCGUCGa -3'
miRNA:   3'- cUUCUaGGGGucGAGGUCgCCGUAGU- -5'
29020 5' -56.9 NC_006146.1 + 56472 1.09 0.002358
Target:  5'- cGAAGAUCCCCAGCUCCAGCGGCAUCAg -3'
miRNA:   3'- -CUUCUAGGGGUCGAGGUCGCCGUAGU- -5'
29020 5' -56.9 NC_006146.1 + 123469 0.73 0.49826
Target:  5'- -cAGGUgCCCCAGCUCCuccauccuaacGGUGGuCAUCAg -3'
miRNA:   3'- cuUCUA-GGGGUCGAGG-----------UCGCC-GUAGU- -5'
29020 5' -56.9 NC_006146.1 + 137895 0.72 0.571468
Target:  5'- aGggGGUCCCCguggacagggccgggGGUUCCGGgGGCAg-- -3'
miRNA:   3'- -CuuCUAGGGG---------------UCGAGGUCgCCGUagu -5'
29020 5' -56.9 NC_006146.1 + 39665 0.71 0.608076
Target:  5'- uGGAGAUCCa-GGCUCUGGgGGCGUUg -3'
miRNA:   3'- -CUUCUAGGggUCGAGGUCgCCGUAGu -5'
29020 5' -56.9 NC_006146.1 + 129387 0.71 0.608076
Target:  5'- -cGGAUCCCgGGCgUCAGCcgGGCGUCGu -3'
miRNA:   3'- cuUCUAGGGgUCGaGGUCG--CCGUAGU- -5'
29020 5' -56.9 NC_006146.1 + 53790 0.71 0.628536
Target:  5'- cGAGGG-CCUCGGC-CCGcGCGGCGUCc -3'
miRNA:   3'- -CUUCUaGGGGUCGaGGU-CGCCGUAGu -5'
29020 5' -56.9 NC_006146.1 + 66858 0.67 0.813701
Target:  5'- -uAGAucUCCCCAGCgUCCAG-GGCGc-- -3'
miRNA:   3'- cuUCU--AGGGGUCG-AGGUCgCCGUagu -5'
29020 5' -56.9 NC_006146.1 + 169564 0.67 0.804907
Target:  5'- gGggGGcuUCCCCGGggCCcgAGCGcGCGUCGg -3'
miRNA:   3'- -CuuCU--AGGGGUCgaGG--UCGC-CGUAGU- -5'
29020 5' -56.9 NC_006146.1 + 123935 0.7 0.669423
Target:  5'- uGAAcGGUCCCCucAGCUCCGGCaGGUccuUCGu -3'
miRNA:   3'- -CUU-CUAGGGG--UCGAGGUCG-CCGu--AGU- -5'
29020 5' -56.9 NC_006146.1 + 43493 0.67 0.82233
Target:  5'- --uGAca-CCGGCUCCGGCGGCGg-- -3'
miRNA:   3'- cuuCUaggGGUCGAGGUCGCCGUagu -5'
29020 5' -56.9 NC_006146.1 + 53332 0.68 0.777621
Target:  5'- cGAGGAggCCCGGCggCCgcggGGCGGCGUgAg -3'
miRNA:   3'- -CUUCUagGGGUCGa-GG----UCGCCGUAgU- -5'
29020 5' -56.9 NC_006146.1 + 168632 0.67 0.804907
Target:  5'- gGggGGcuUCCCCGGggCCcgAGCGcGCGUCGg -3'
miRNA:   3'- -CuuCU--AGGGGUCgaGG--UCGC-CGUAGU- -5'
29020 5' -56.9 NC_006146.1 + 153323 0.67 0.82233
Target:  5'- -cAGGUCgCCCAGCauccgauugaUCUGGCGGCG-CAg -3'
miRNA:   3'- cuUCUAG-GGGUCG----------AGGUCGCCGUaGU- -5'
29020 5' -56.9 NC_006146.1 + 102546 0.66 0.877476
Target:  5'- cGggGAUCUCCacagaGGCgUCCAGCaGCAg-- -3'
miRNA:   3'- -CuuCUAGGGG-----UCG-AGGUCGcCGUagu -5'
29020 5' -56.9 NC_006146.1 + 92491 0.67 0.804907
Target:  5'- gGGAGGUCCagaagGGC-CCAGCGGCuccuAUCAg -3'
miRNA:   3'- -CUUCUAGGgg---UCGaGGUCGCCG----UAGU- -5'
29020 5' -56.9 NC_006146.1 + 167699 0.67 0.804907
Target:  5'- gGggGGcuUCCCCGGggCCcgAGCGcGCGUCGg -3'
miRNA:   3'- -CuuCU--AGGGGUCgaGG--UCGC-CGUAGU- -5'
29020 5' -56.9 NC_006146.1 + 55748 0.7 0.649007
Target:  5'- cAAGAUCUCCAccGC-CCGGCGGCGg-- -3'
miRNA:   3'- cUUCUAGGGGU--CGaGGUCGCCGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.