miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29020 5' -56.9 NC_006146.1 + 10839 0.66 0.870209
Target:  5'- -cAGGUgCCUGacugugccGCUCCucuGCGGCAUCAc -3'
miRNA:   3'- cuUCUAgGGGU--------CGAGGu--CGCCGUAGU- -5'
29020 5' -56.9 NC_006146.1 + 59788 0.66 0.862727
Target:  5'- uGAGGGUgucgaCCCggcagAGCUCCAGCugauugagGGCGUCGu -3'
miRNA:   3'- -CUUCUAg----GGG-----UCGAGGUCG--------CCGUAGU- -5'
29020 5' -56.9 NC_006146.1 + 102375 0.67 0.82233
Target:  5'- aAAGGUCUCCGGgUCCucggggagcuGGUGGUAUCu -3'
miRNA:   3'- cUUCUAGGGGUCgAGG----------UCGCCGUAGu -5'
29020 5' -56.9 NC_006146.1 + 73169 0.67 0.82233
Target:  5'- uGAGGcgCCCCAGCaCCuccCGGCAUa- -3'
miRNA:   3'- -CUUCuaGGGGUCGaGGuc-GCCGUAgu -5'
29020 5' -56.9 NC_006146.1 + 84871 0.68 0.795957
Target:  5'- cGGAGA-CagCGGCUCCAGUGGCAg-- -3'
miRNA:   3'- -CUUCUaGggGUCGAGGUCGCCGUagu -5'
29020 5' -56.9 NC_006146.1 + 115169 0.68 0.792335
Target:  5'- uGGAGAUCUUgGGCguguacgcggaggCCAGCGGCGggCAg -3'
miRNA:   3'- -CUUCUAGGGgUCGa------------GGUCGCCGUa-GU- -5'
29020 5' -56.9 NC_006146.1 + 105825 0.68 0.786859
Target:  5'- aGGGGUCCCCGGCcgacaUCCGGaGGCGc-- -3'
miRNA:   3'- cUUCUAGGGGUCG-----AGGUCgCCGUagu -5'
29020 5' -56.9 NC_006146.1 + 99077 0.68 0.786859
Target:  5'- --uGGUCUCCGGCUCuacauCAGUGGCAa-- -3'
miRNA:   3'- cuuCUAGGGGUCGAG-----GUCGCCGUagu -5'
29020 5' -56.9 NC_006146.1 + 17792 0.68 0.786859
Target:  5'- uGAGGGUCCCgGGCUCCgAGa-GCAUg- -3'
miRNA:   3'- -CUUCUAGGGgUCGAGG-UCgcCGUAgu -5'
29020 5' -56.9 NC_006146.1 + 119827 0.68 0.768254
Target:  5'- ---cAUCCCCAcuGCcuucugUCCAGCGGCAgUCAu -3'
miRNA:   3'- cuucUAGGGGU--CG------AGGUCGCCGU-AGU- -5'
29020 5' -56.9 NC_006146.1 + 137594 0.69 0.739459
Target:  5'- -cGGAgCCCCAGgaCCgAGCGGCGgcgCAg -3'
miRNA:   3'- cuUCUaGGGGUCgaGG-UCGCCGUa--GU- -5'
29020 5' -56.9 NC_006146.1 + 137472 0.69 0.739459
Target:  5'- -cGGAgCCCCAGgaCCgAGCGGCGgcgCAg -3'
miRNA:   3'- cuUCUaGGGGUCgaGG-UCGCCGUa--GU- -5'
29020 5' -56.9 NC_006146.1 + 61589 0.69 0.709822
Target:  5'- gGAAGAg--CCGGCUgCAGCGGCcgCGg -3'
miRNA:   3'- -CUUCUaggGGUCGAgGUCGCCGuaGU- -5'
29020 5' -56.9 NC_006146.1 + 167971 0.66 0.884525
Target:  5'- uGAuGAcUCCCAGCUCCccgguaaacauGGUGGgCGUCAg -3'
miRNA:   3'- -CUuCUaGGGGUCGAGG-----------UCGCC-GUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.