miRNA display CGI


Results 1 - 20 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 123581 0.66 0.807024
Target:  5'- cCGGCugGAGGCCAUCaUCCaGGAG-GCCc -3'
miRNA:   3'- aGUCG--UUCCGGUAG-GGGgCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 75398 0.66 0.780633
Target:  5'- aCAGCucccggauaugGAGGCCuucUCCCCC-GAGUuugACCc -3'
miRNA:   3'- aGUCG-----------UUCCGGu--AGGGGGcCUCG---UGG- -5'
29021 3' -59.5 NC_006146.1 + 15035 0.66 0.771574
Target:  5'- -gGGCGccuGGCCAgggCCCgCCGGgccugcgaggaGGCACUg -3'
miRNA:   3'- agUCGUu--CCGGUa--GGG-GGCC-----------UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 118248 0.66 0.762397
Target:  5'- -gGGCGAGGCUGgacgCCCUCau-GCGCCa -3'
miRNA:   3'- agUCGUUCCGGUa---GGGGGccuCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 33192 0.66 0.759623
Target:  5'- cUCGGUccuGGGCCuccgggugcuccugGUgCUCCGGGGCAgCCg -3'
miRNA:   3'- -AGUCGu--UCCGG--------------UAgGGGGCCUCGU-GG- -5'
29021 3' -59.5 NC_006146.1 + 41249 0.66 0.762397
Target:  5'- -aAGCGcucucGCCAUUCCCgggCGGAGCACg -3'
miRNA:   3'- agUCGUuc---CGGUAGGGG---GCCUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 102667 0.66 0.762397
Target:  5'- gUCAGCcgcGCC-UCCCCCGcuGUGCCg -3'
miRNA:   3'- -AGUCGuucCGGuAGGGGGCcuCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 158827 0.66 0.762397
Target:  5'- aCGGcCGGGGCCcggCCCUCGcaaagcGAGCACa -3'
miRNA:   3'- aGUC-GUUCCGGua-GGGGGC------CUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 137907 0.66 0.771574
Target:  5'- -uGGaCAGGGCCGggggUUCCgGGGGCAgCCg -3'
miRNA:   3'- agUC-GUUCCGGUa---GGGGgCCUCGU-GG- -5'
29021 3' -59.5 NC_006146.1 + 12077 0.66 0.789566
Target:  5'- --uGCgAGGGCCGggCCCCGGccguGUGCCu -3'
miRNA:   3'- aguCG-UUCCGGUagGGGGCCu---CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 60875 0.66 0.789566
Target:  5'- gUCA-CGAGGCCAUCUUUgaucaggaCGGAGC-CCu -3'
miRNA:   3'- -AGUcGUUCCGGUAGGGG--------GCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 207 0.66 0.789566
Target:  5'- --cGCcGGuGCCcccgcgacggUCCCCGGGGCGCCc -3'
miRNA:   3'- aguCGuUC-CGGua--------GGGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 90098 0.66 0.801847
Target:  5'- -aGGCcguaaaugaaaaugaGGGGCC-UCCUCUGGGGUAUCu -3'
miRNA:   3'- agUCG---------------UUCCGGuAGGGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 3019 0.66 0.798366
Target:  5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3'
miRNA:   3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 2087 0.66 0.798366
Target:  5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3'
miRNA:   3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 1155 0.66 0.798366
Target:  5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3'
miRNA:   3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 42068 0.66 0.798366
Target:  5'- -uGGCcGGGCUuaccugCUCCUGGAccGCGCCg -3'
miRNA:   3'- agUCGuUCCGGua----GGGGGCCU--CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 17488 0.66 0.798366
Target:  5'- cCAGCcacaCCcgCCCCCGGgaacucccuuGGCACCc -3'
miRNA:   3'- aGUCGuuccGGuaGGGGGCC----------UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 98311 0.66 0.789566
Target:  5'- --uGCGAGuGCCGggguucuaaCCCCGGcaagccccAGCACCa -3'
miRNA:   3'- aguCGUUC-CGGUag-------GGGGCC--------UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 123702 0.66 0.789566
Target:  5'- gCGGCcaGGGGCCuggCgCUCGGGGCGgCg -3'
miRNA:   3'- aGUCG--UUCCGGua-GgGGGCCUCGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.