Results 1 - 20 of 336 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29021 | 3' | -59.5 | NC_006146.1 | + | 207 | 0.66 | 0.789566 |
Target: 5'- --cGCcGGuGCCcccgcgacggUCCCCGGGGCGCCc -3' miRNA: 3'- aguCGuUC-CGGua--------GGGGGCCUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 448 | 0.68 | 0.67591 |
Target: 5'- --cGCGGGacacGCCcccggGUCCCCCGGcacGCGCCg -3' miRNA: 3'- aguCGUUC----CGG-----UAGGGGGCCu--CGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 721 | 0.67 | 0.743725 |
Target: 5'- cCGGCcccgcccucGGGaGCCcccucagCCCCCGGccGGCGCCg -3' miRNA: 3'- aGUCG---------UUC-CGGua-----GGGGGCC--UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 899 | 0.69 | 0.63623 |
Target: 5'- -gGGgAAGGCCGcgcgccgcCCCCCGGGaccccgggcgcGCGCCg -3' miRNA: 3'- agUCgUUCCGGUa-------GGGGGCCU-----------CGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 1155 | 0.66 | 0.798366 |
Target: 5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3' miRNA: 3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 1379 | 0.68 | 0.67591 |
Target: 5'- --cGCGGGacacGCCcccggGUCCCCCGGcacGCGCCg -3' miRNA: 3'- aguCGUUC----CGG-----UAGGGGGCCu--CGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 1652 | 0.67 | 0.743725 |
Target: 5'- cCGGCcccgcccucGGGaGCCcccucagCCCCCGGccGGCGCCg -3' miRNA: 3'- aGUCG---------UUC-CGGua-----GGGGGCC--UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 1831 | 0.69 | 0.63623 |
Target: 5'- -gGGgAAGGCCGcgcgccgcCCCCCGGGaccccgggcgcGCGCCg -3' miRNA: 3'- agUCgUUCCGGUa-------GGGGGCCU-----------CGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 2087 | 0.66 | 0.798366 |
Target: 5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3' miRNA: 3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 2311 | 0.68 | 0.67591 |
Target: 5'- --cGCGGGacacGCCcccggGUCCCCCGGcacGCGCCg -3' miRNA: 3'- aguCGUUC----CGG-----UAGGGGGCCu--CGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 2584 | 0.67 | 0.743725 |
Target: 5'- cCGGCcccgcccucGGGaGCCcccucagCCCCCGGccGGCGCCg -3' miRNA: 3'- aGUCG---------UUC-CGGua-----GGGGGCC--UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 2763 | 0.69 | 0.63623 |
Target: 5'- -gGGgAAGGCCGcgcgccgcCCCCCGGGaccccgggcgcGCGCCg -3' miRNA: 3'- agUCgUUCCGGUa-------GGGGGCCU-----------CGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 3003 | 0.68 | 0.656107 |
Target: 5'- gUCAuGCuGGGGCCuuuccaUCCCUGGAGCaACCu -3' miRNA: 3'- -AGU-CG-UUCCGGua----GGGGGCCUCG-UGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 3019 | 0.66 | 0.798366 |
Target: 5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3' miRNA: 3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 3243 | 0.68 | 0.67591 |
Target: 5'- --cGCGGGacacGCCcccggGUCCCCCGGcacGCGCCg -3' miRNA: 3'- aguCGUUC----CGG-----UAGGGGGCCu--CGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 3516 | 0.67 | 0.743725 |
Target: 5'- cCGGCcccgcccucGGGaGCCcccucagCCCCCGGccGGCGCCg -3' miRNA: 3'- aGUCG---------UUC-CGGua-----GGGGGCC--UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 3695 | 0.69 | 0.63623 |
Target: 5'- -gGGgAAGGCCGcgcgccgcCCCCCGGGaccccgggcgcGCGCCg -3' miRNA: 3'- agUCgUUCCGGUa-------GGGGGCCU-----------CGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 3890 | 0.71 | 0.470148 |
Target: 5'- cUCGGCGAGGCCcaccgacgaggCCCCCaaggucucGGGUACCg -3' miRNA: 3'- -AGUCGUUCCGGua---------GGGGGc-------CUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 4358 | 0.69 | 0.58661 |
Target: 5'- uUCAGCGAcguGGCCAcggCCCCgCGG-GCuCCc -3' miRNA: 3'- -AGUCGUU---CCGGUa--GGGG-GCCuCGuGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 4519 | 0.66 | 0.798366 |
Target: 5'- cCAGCGGGGggugaCCAUCUCggugCCGGcAGcCGCCg -3' miRNA: 3'- aGUCGUUCC-----GGUAGGG----GGCC-UC-GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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