miRNA display CGI


Results 1 - 20 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 207 0.66 0.789566
Target:  5'- --cGCcGGuGCCcccgcgacggUCCCCGGGGCGCCc -3'
miRNA:   3'- aguCGuUC-CGGua--------GGGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 448 0.68 0.67591
Target:  5'- --cGCGGGacacGCCcccggGUCCCCCGGcacGCGCCg -3'
miRNA:   3'- aguCGUUC----CGG-----UAGGGGGCCu--CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 721 0.67 0.743725
Target:  5'- cCGGCcccgcccucGGGaGCCcccucagCCCCCGGccGGCGCCg -3'
miRNA:   3'- aGUCG---------UUC-CGGua-----GGGGGCC--UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 899 0.69 0.63623
Target:  5'- -gGGgAAGGCCGcgcgccgcCCCCCGGGaccccgggcgcGCGCCg -3'
miRNA:   3'- agUCgUUCCGGUa-------GGGGGCCU-----------CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 1155 0.66 0.798366
Target:  5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3'
miRNA:   3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 1379 0.68 0.67591
Target:  5'- --cGCGGGacacGCCcccggGUCCCCCGGcacGCGCCg -3'
miRNA:   3'- aguCGUUC----CGG-----UAGGGGGCCu--CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 1652 0.67 0.743725
Target:  5'- cCGGCcccgcccucGGGaGCCcccucagCCCCCGGccGGCGCCg -3'
miRNA:   3'- aGUCG---------UUC-CGGua-----GGGGGCC--UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 1831 0.69 0.63623
Target:  5'- -gGGgAAGGCCGcgcgccgcCCCCCGGGaccccgggcgcGCGCCg -3'
miRNA:   3'- agUCgUUCCGGUa-------GGGGGCCU-----------CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 2087 0.66 0.798366
Target:  5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3'
miRNA:   3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 2311 0.68 0.67591
Target:  5'- --cGCGGGacacGCCcccggGUCCCCCGGcacGCGCCg -3'
miRNA:   3'- aguCGUUC----CGG-----UAGGGGGCCu--CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 2584 0.67 0.743725
Target:  5'- cCGGCcccgcccucGGGaGCCcccucagCCCCCGGccGGCGCCg -3'
miRNA:   3'- aGUCG---------UUC-CGGua-----GGGGGCC--UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 2763 0.69 0.63623
Target:  5'- -gGGgAAGGCCGcgcgccgcCCCCCGGGaccccgggcgcGCGCCg -3'
miRNA:   3'- agUCgUUCCGGUa-------GGGGGCCU-----------CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 3003 0.68 0.656107
Target:  5'- gUCAuGCuGGGGCCuuuccaUCCCUGGAGCaACCu -3'
miRNA:   3'- -AGU-CG-UUCCGGua----GGGGGCCUCG-UGG- -5'
29021 3' -59.5 NC_006146.1 + 3019 0.66 0.798366
Target:  5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3'
miRNA:   3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 3243 0.68 0.67591
Target:  5'- --cGCGGGacacGCCcccggGUCCCCCGGcacGCGCCg -3'
miRNA:   3'- aguCGUUC----CGG-----UAGGGGGCCu--CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 3516 0.67 0.743725
Target:  5'- cCGGCcccgcccucGGGaGCCcccucagCCCCCGGccGGCGCCg -3'
miRNA:   3'- aGUCG---------UUC-CGGua-----GGGGGCC--UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 3695 0.69 0.63623
Target:  5'- -gGGgAAGGCCGcgcgccgcCCCCCGGGaccccgggcgcGCGCCg -3'
miRNA:   3'- agUCgUUCCGGUa-------GGGGGCCU-----------CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 3890 0.71 0.470148
Target:  5'- cUCGGCGAGGCCcaccgacgaggCCCCCaaggucucGGGUACCg -3'
miRNA:   3'- -AGUCGUUCCGGua---------GGGGGc-------CUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 4358 0.69 0.58661
Target:  5'- uUCAGCGAcguGGCCAcggCCCCgCGG-GCuCCc -3'
miRNA:   3'- -AGUCGUU---CCGGUa--GGGG-GCCuCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 4519 0.66 0.798366
Target:  5'- cCAGCGGGGggugaCCAUCUCggugCCGGcAGcCGCCg -3'
miRNA:   3'- aGUCGUUCC-----GGUAGGG----GGCC-UC-GUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.