miRNA display CGI


Results 21 - 40 of 336 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 32996 0.66 0.789566
Target:  5'- uUCAGUGccGCCGcuaCCCCCGGGGgAUg -3'
miRNA:   3'- -AGUCGUucCGGUa--GGGGGCCUCgUGg -5'
29021 3' -59.5 NC_006146.1 + 207 0.66 0.789566
Target:  5'- --cGCcGGuGCCcccgcgacggUCCCCGGGGCGCCc -3'
miRNA:   3'- aguCGuUC-CGGua--------GGGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 60875 0.66 0.789566
Target:  5'- gUCA-CGAGGCCAUCUUUgaucaggaCGGAGC-CCu -3'
miRNA:   3'- -AGUcGUUCCGGUAGGGG--------GCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 12077 0.66 0.789566
Target:  5'- --uGCgAGGGCCGggCCCCGGccguGUGCCu -3'
miRNA:   3'- aguCG-UUCCGGUagGGGGCCu---CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 98311 0.66 0.789566
Target:  5'- --uGCGAGuGCCGggguucuaaCCCCGGcaagccccAGCACCa -3'
miRNA:   3'- aguCGUUC-CGGUag-------GGGGCC--------UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 59725 0.66 0.788679
Target:  5'- gUCGG-GGGGCgCAUCUCUCGccuccccGAGCGCCu -3'
miRNA:   3'- -AGUCgUUCCG-GUAGGGGGC-------CUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 106448 0.66 0.788679
Target:  5'- uUCAGCAGGacagcGCCA-CCCaaGGcugucucGGCGCCg -3'
miRNA:   3'- -AGUCGUUC-----CGGUaGGGggCC-------UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 151167 0.66 0.7869
Target:  5'- gUCAGCAGgaugcggcgguagcGGCCGgccuccUCCCCCGu-GgACCa -3'
miRNA:   3'- -AGUCGUU--------------CCGGU------AGGGGGCcuCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 168112 0.66 0.780633
Target:  5'- aCGG-GAGGCCGgcgcgCgCCCGGGGUcCCg -3'
miRNA:   3'- aGUCgUUCCGGUa----GgGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 167180 0.66 0.780633
Target:  5'- aCGG-GAGGCCGgcgcgCgCCCGGGGUcCCg -3'
miRNA:   3'- aGUCgUUCCGGUa----GgGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 47009 0.66 0.780633
Target:  5'- cCGGCAGcGGCCcgGUCggaCUCGcGGGCGCCc -3'
miRNA:   3'- aGUCGUU-CCGG--UAGg--GGGC-CUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 34074 0.66 0.780633
Target:  5'- -uGGCAcgGGGCCggggGUCCCggGGGGCAgCCg -3'
miRNA:   3'- agUCGU--UCCGG----UAGGGggCCUCGU-GG- -5'
29021 3' -59.5 NC_006146.1 + 101089 0.66 0.780633
Target:  5'- -uGGuCAAGGCucaggacaacucCAUCCCCCaGGA-CACCu -3'
miRNA:   3'- agUC-GUUCCG------------GUAGGGGG-CCUcGUGG- -5'
29021 3' -59.5 NC_006146.1 + 169044 0.66 0.780633
Target:  5'- aCGG-GAGGCCGgcgcgCgCCCGGGGUcCCg -3'
miRNA:   3'- aGUCgUUCCGGUa----GgGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 169976 0.66 0.780633
Target:  5'- aCGG-GAGGCCGgcgcgCgCCCGGGGUcCCg -3'
miRNA:   3'- aGUCgUUCCGGUa----GgGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 75398 0.66 0.780633
Target:  5'- aCAGCucccggauaugGAGGCCuucUCCCCC-GAGUuugACCc -3'
miRNA:   3'- aGUCG-----------UUCCGGu--AGGGGGcCUCG---UGG- -5'
29021 3' -59.5 NC_006146.1 + 60003 0.66 0.780633
Target:  5'- --uGCAAGGCCAacgcggccccgUCCCCGccuGCGCCc -3'
miRNA:   3'- aguCGUUCCGGUa----------GGGGGCcu-CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 85915 0.66 0.779733
Target:  5'- --cGCGGGGCUuuaCCCUGGGGCcuggaugGCCu -3'
miRNA:   3'- aguCGUUCCGGuagGGGGCCUCG-------UGG- -5'
29021 3' -59.5 NC_006146.1 + 49091 0.66 0.771574
Target:  5'- uUCAccGCAGcGGCCGUCUCCCucaaGGuGCugUg -3'
miRNA:   3'- -AGU--CGUU-CCGGUAGGGGG----CCuCGugG- -5'
29021 3' -59.5 NC_006146.1 + 15035 0.66 0.771574
Target:  5'- -gGGCGccuGGCCAgggCCCgCCGGgccugcgaggaGGCACUg -3'
miRNA:   3'- agUCGUu--CCGGUa--GGG-GGCC-----------UCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.